Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00764 ATGGGAGAGGTGGCAGTAATGCGCTCTGAGCCTCTGCAATTCGACTGCAATGACATTAAAGACATGACTGAGAAGGAAGTGTACCCTCCAGAATCAAATGCAGAAGACTTGCCTGGAGAAGAATCATGTCAATCAACAGACCTCAAAAATATCAATGAATTGCGAGATAAGGGATATATGGAGTATGGTTGTCAACATTACCGGAGAAGATGCCGAATCAGGTCCCCCTGTTGTAATGAGATTTTTGATTGCCGCCATTGTCACAATGAAGCAAAAAATGATATCAACATTGATCAGAAGGATAGACATGACATTCCCCGGCACCAAGTCAAACAGGTGATTTGTTCACTTTGTGGGACAGAACAAGAGGTTCAGCAGAACTGTATAAATTGTGGTGTTTGTATGGGCAAGTACTTCTGTGGAACATGCAAGCTTTTTGATGATGATATATCTAAGCAGCAGTACCATTGCAGTGGCTGTGGAATTTGCAGAACTGGAGGAAGCGAAAATTTCTTCCATTGCTACAAGTGTGGTTGTTGCTACTCGACTCTGCTGAAAAACAGTCACCCTTGTGTAGAAGGAGCAATGCATCATGATTGCCCTGTTTGTTTTGAATATTTATTTGAATCAAGAAATGATGTCACTGTTATGCCATGTGGACATACAATCCATAAGAGCTGCCTGAATGAAATGAGGGAGCATTTCCGGTATGCCTGCCCTCTCTGCTCGGCGTCAGTCTGTGATATGTCAAAGGTTTGGGAGAAATTTGACCTCGAGATTGCTGCTACACCAATGCCTGAACCATATCAACATAAAATGGTTTGGATTCTTTGTAATGACTGTGGTAAAACTTCTCACGTTCAGTTCCATTTTGTGGGTCAAAAGTGCCTGAACTGCAGGTCCTACAATACACGACAAACATGA 924 0.4232 MGEVAVMRSEPLQFDCNDIKDMTEKEVYPPESNAEDLPGEESCQSTDLKNINELRDKGYMEYGCQHYRRRCRIRSPCCNEIFDCRHCHNEAKNDINIDQKDRHDIPRHQVKQVICSLCGTEQEVQQNCINCGVCMGKYFCGTCKLFDDDISKQQYHCSGCGICRTGGSENFFHCYKCGCCYSTLLKNSHPCVEGAMHHDCPVCFEYLFESRNDVTVMPCGHTIHKSCLNEMREHFRYACPLCSASVCDMSKVWEKFDLEIAATPMPEPYQHKMVWILCNDCGKTSHVQFHFVGQKCLNCRSYNTRQT* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00764 307 ProSiteProfiles Zinc finger RING-type profile. 200 243 IPR001841 -
Phac1g00764 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 244 IPR013083 -
Phac1g00764 307 Pfam CHY zinc finger 64 145 IPR008913 GO:0008270
Phac1g00764 307 ProSiteProfiles Zinc finger CHY-type profile. 57 133 IPR008913 GO:0008270
Phac1g00764 307 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 48 307 - -
Phac1g00764 307 ProSiteProfiles Zinc finger CTCHY-type profile. 135 199 IPR017921 -
Phac1g00764 307 Gene3D - 271 307 - -
Phac1g00764 307 Pfam Zinc-ribbon 247 305 IPR039512 -
Phac1g00764 307 SUPERFAMILY Zinc hairpin stack 136 193 IPR037275 -
Phac1g00764 307 CDD RING-H2_Pirh2-like 199 243 - -
Phac1g00764 307 SMART ring_2 200 242 IPR001841 -
Phac1g00764 307 SUPERFAMILY CHY zinc finger-like 61 135 IPR037274 GO:0008270
Phac1g00764 307 Pfam Ring finger domain 199 242 IPR001841 -
Phac1g00764 307 SUPERFAMILY RING/U-box 199 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00764 Phac-Chr1 6354801 6361396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00764 54 305 C2H2 Transcription Factor Family AT3G18290 37.984 9.31e-52 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00764 K10144 - gmx:100803569 636.721