Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00749 ATGGAGCGGCCTGGGAGCACCAATGGCAGTCAGCATGTGATAGAGATAGCTGGGAGTTCCGATGCTTCCACATCATCTGCGACACATCATGATAGGAGTTTTAATGGCACAGATGTGACCCCGCATGAAGAAAGAATTACCGGTGCAAGGACGCCTCTATCTCAGCCTTCAGTTTCAGTCACTAGTTTATCTAATGGGTCTAATAGTCGGAATTCCTCATTCATGAGACGCGGGGATACTCGTAGGAGTAGGAGTCCTGTGCATTCGGGGTTATGGATATCGATTGAGCTGGTCCTCTTAGTGAGCCAGATTGTTGCATCTATCGTTGTTTTGTCTTTGTCAAGGCATGAACATCCACGTACTCCATTGTTTCAATGGATCATAGGTTATGCTTCTGGATGTGTTGCTACCCTCCCTCTGCTTTATTGGCGGTATTATCACCATAACCATATGAGAGAGCAAGATTCTTCACAATCAAGGCAAACATCTCCTCGGATTAATGATCCTTCAGGGACACTCCTTTTCAGTTCCAGAACTAATGGTGGAGAAGATGGTCAGGCTGTTGCATCCTCCAGAAGCAATCAAGCTTCTGTGTTGATGAATAGAAGAATGAAGACTCTAGTGGAATACTTCAAAATATCTTTAGATTGCTTTTTTGCTGTATGGTTTGTTGTTGGAAATGTATGGATCTTTGGGGGACGTTCTTCTGCTGATGAAGCTCCTAACTTGTACAGGTTATGTATAGTGTTTCTTGCCTTTAGCTGTATTGGTTATGCTATGCCCTTCATTCTCTGTTCAACAATCTGCTGTTGTCTCCCATGTATAATTTCCATTCTTGGGGTTAGAGAGGATATGTCTCAAAATAGAGGGGCAACTTCTGAATCCATTAATGCTTTGCCAACGTACAAGTTCAAGATGAAGAAAAATAAAAAAAATGGAGAAGGCAACTCAACTGAAGGTGGAGTTGTGGCTGCAGGAACTGAAAAAGAGCGAGGAATATCTGGAGAAGATGCGGTATGCTGCATCTGCCTGGCAAAGTATGAAAATAACGATGAGTTGAGAGAATTGCCTTGTTCTCATCTTTTCCACAAAGATTGTGTGGATAAATGGTTGAAGATAAATTCATTATGCCCTCTTTGCAAGAGTGATGTTGGTGAGAACTTAACAGGATTGGTCTCAGGAGAAGATGCCATCCAACATCGGAGTGAGAGCAGGATTGAGAATGACCTCGCGAGTACCTCAGTTTAG 1248 0.4303 MERPGSTNGSQHVIEIAGSSDASTSSATHHDRSFNGTDVTPHEERITGARTPLSQPSVSVTSLSNGSNSRNSSFMRRGDTRRSRSPVHSGLWISIELVLLVSQIVASIVVLSLSRHEHPRTPLFQWIIGYASGCVATLPLLYWRYYHHNHMREQDSSQSRQTSPRINDPSGTLLFSSRTNGGEDGQAVASSRSNQASVLMNRRMKTLVEYFKISLDCFFAVWFVVGNVWIFGGRSSADEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDMSQNRGATSESINALPTYKFKMKKNKKNGEGNSTEGGVVAAGTEKERGISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINSLCPLCKSDVGENLTGLVSGEDAIQHRSESRIENDLASTSV* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00749 415 MobiDBLite consensus disorder prediction 1 85 - -
Phac1g00749 415 FunFam E3 ubiquitin-protein ligase 323 389 - -
Phac1g00749 415 MobiDBLite consensus disorder prediction 50 74 - -
Phac1g00749 415 ProSiteProfiles Zinc finger RING-type profile. 340 381 IPR001841 -
Phac1g00749 415 Pfam Ring finger domain 340 381 IPR001841 -
Phac1g00749 415 SMART ringv_2 339 381 IPR011016 GO:0008270
Phac1g00749 415 SUPERFAMILY RING/U-box 334 387 - -
Phac1g00749 415 SMART ring_2 340 380 IPR001841 -
Phac1g00749 415 MobiDBLite consensus disorder prediction 1 34 - -
Phac1g00749 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 387 IPR013083 -
Phac1g00749 415 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00749 Phac-Chr1 6159419 6167007 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00749 76 387 C3H Transcription Factor Family AT1G80400 58.176 1.58e-138 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00749 - - gmx:100778728 715.687