Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00731 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTACCTTGTGAAGAGGGATTTGAAGGCCTCAGCTCAGGCTTTTCAAGCTGAAGGGAAAGTGTCGTCGGACCCTGTTGCTATTGATGCACCAGGAGGATTTCTGTTCGAGTGGTGGTCTGTTTTCTGGGACATATTTATTTCCAGGACCAATGAGAAGCACTCTGAGGTTGCTGCATCTTATATCGAGACACAATTTATGAAGGCTAGAGAGCAACAACAGCAGCAACAACAGCAACAGCAGCAGCAGCCACAACCTCAGCAGTCACAACATCAGCAGCAACAGCAGCAACAACAACAACACATACAGATGCAACAAATCCTGTTACAGAGGGCTCAGCAACAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAACCACAACAGCAACAGCAACAGCAACAGCAGCCACAACATCAGCAGCCACCACCTCAGCAGCAGCAGGGTAGGGAAAGGACTCATCTCTTAAATGGTGGTACCAATGGGTTAGTTGGAAACCCTAGCACTGCAAATGCACTGGCAACAAAGATGTATGAGGAAAGGTTAAAACTTCCCCTTCAAAGGGACTCTTTGGAAGATGCAGCAATGAAGCAAAGATTTGGAGGCCAACTCTTGGACCCTAATCATGCCTCAATATTGAAGTCATCTGCAGCTACCGGCCAGCCTTCAGGCCAAGTTTTGCATGGTGCTGCTGGTGCAATGTCTCCACAAGTTCAAGCACGTAGTCAGCAATTACCAGGGTCTACTCCGGATATAAAGAGTGAGATCAATCCTGTTTTAAATCCCAGAGCTGCAGGTCCTGAAGGATCATTGATAGCAATGCCTGGTTCAAATCAAGGTAGCAACAATTTAACTCTAAAAGGGTGGCCACTAACGGGGTTGGAGCAACTACGTTCTGGTCTACTTCAGCAACAGAAACCACCTTTCATACAGTCTCCTCAACCATTTCATCAACTTCCAATGTTGACACCACAACATCAACAACAGCTAATTCTGGCACAGCAAAATTTGGCATCACCATCTGGCAGTGATGATAATAGAAGACTCAGAATGCTGCTGAATAACAGGAATATGGGTGTAGCTAAGGATGGTCTTTCGAACCCTGTTGGTGATGTTGTATCAAATGTTGGATCACCTCTTCAAGCAGGTGGCCCTGCTTTCCAGCGTAGTGATACAGACATGCTAATGAAGTTGAAACTGGCACACTTACACCAACATCAACAACAGCAGAATGCCAATCCACAACAGCAGCAACTGCAACAGCATACTCTATCAAATCAGCAATCTCAGTCTTCAAATCATAACATGCATCAGCAGGATAAAATGGGGGGAGGTGGTGGTAGTGTCAATGTGGATGGTAGCATGTCAAACTCCTTTAGAGGCAACGATCAGGTTTCCAAAAGCCAGACTGGGAGAAAGAGAAAGCAGCCTGCATCTTCTGGTCCTGCCAATAGTTCTGGAACAGCTAATACAGCTGGCCCATCTCCAAGTTCAGCACCCTCGACTCCCTCGACACATACACCCAGTGATGTGATGTCAATGCCTGCTTTGCCTCATAGTGGTAGTTCTTCAAAGCCATTAATGATGTTTGGCGCTGATGGTGCTGGAACTCTTACATCACCTTCAAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGATCGTTTTGTGGAGGATGGATCTCTTGACGATAATGTTGAGTCTTTTTTATCCCATGATGATAACGACCCGAGAGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAATAAATTCTGTACCTGCAAGCACTAACAAAGTTGTCTGTTGCCATTTCTCGTCTGATGGGAAATTGCTTGCTAGTGGTGGCCATGACAAAAAGGCTGTTTTATGGTTCACAGATTCTCTAAAACAAAAGGCTACTCTTGAAGAACATTCTTCTTTAATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGCCTTGCTACATCTTCATATGACAGAACTGTCAGGGTGTGGGATGTTGATAATCCTGGATATACGCTTCGTACTTTTACTGGTCATTCTTCATCTGTTATGTCACTAGATTTTCACCCTAATAAAGACGATCTTATCTGCTCTTGTGATGTTGATGGTGAGATACGATATTGGAGCATTAACAATGGCAGTTGTGCTAGAGTCTCAAAGGGTGGCACTGCTCAGATGAGATTTCAACCTCGTCTAGGGAGGTTCCTAGCTGCAGCTGCTGAGAATGTTGTTTCAATATTTGATGTGGAAACACAAGCATGTCGATATTCATTAAAGGGACATACAAAATCAATACATTCTGTGTGTTGGGATCCTTCTGGGGAGTTCCTGGCATCTGTCAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCAGGGAGTGAAGGGGAGTGTGTTCACGAGCTTAGCTGCAATGGCAATAAGTTTCACTCATGTGTTTTCCATCCAACATTTTCTTCGCTGTTGGTAGTTGGTTGTTACGAGTCATTGGAGCTCTGGAACATGACTGAGAACAAGACAATGACTCTATCCGCTCATGAAGGTCTTATTGCTGCATTGGCGGTTTCTACTGTAAATGGTTTGGTTGCTTCAGCCAGTCATGACAAGTTTGTGAAGCTCTGGAAGTGA 2715 0.4494 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFISRTNEKHSEVAASYIETQFMKAREQQQQQQQQQQQQPQPQQSQHQQQQQQQQQHIQMQQILLQRAQQQQQQQQQQQQQQPQQQQQQQQQPQHQQPPPQQQQGRERTHLLNGGTNGLVGNPSTANALATKMYEERLKLPLQRDSLEDAAMKQRFGGQLLDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPPFIQSPQPFHQLPMLTPQHQQQLILAQQNLASPSGSDDNRRLRMLLNNRNMGVAKDGLSNPVGDVVSNVGSPLQAGGPAFQRSDTDMLMKLKLAHLHQHQQQQNANPQQQQLQQHTLSNQQSQSSNHNMHQQDKMGGGGGSVNVDGSMSNSFRGNDQVSKSQTGRKRKQPASSGPANSSGTANTAGPSPSSAPSTPSTHTPSDVMSMPALPHSGSSSKPLMMFGADGAGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDDNVESFLSHDDNDPRDTVGRCMDVSKGFTFSEINSVPASTNKVVCCHFSSDGKLLASGGHDKKAVLWFTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSYDRTVRVWDVDNPGYTLRTFTGHSSSVMSLDFHPNKDDLICSCDVDGEIRYWSINNGSCARVSKGGTAQMRFQPRLGRFLAAAAENVVSIFDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTFSSLLVVGCYESLELWNMTENKTMTLSAHEGLIAALAVSTVNGLVASASHDKFVKLWK* 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00731 904 Gene3D - 756 904 IPR015943 GO:0005515
Phac1g00731 904 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 705 743 - -
Phac1g00731 904 ProSiteProfiles Trp-Asp (WD) repeats profile. 705 747 IPR001680 GO:0005515
Phac1g00731 904 Gene3D - 598 755 IPR015943 GO:0005515
Phac1g00731 904 ProSiteProfiles Trp-Asp (WD) repeats profile. 662 697 IPR001680 GO:0005515
Phac1g00731 904 MobiDBLite consensus disorder prediction 235 304 - -
Phac1g00731 904 ProSiteProfiles Trp-Asp (WD) repeats profile. 787 827 IPR001680 GO:0005515
Phac1g00731 904 MobiDBLite consensus disorder prediction 420 456 - -
Phac1g00731 904 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 662 697 - -
Phac1g00731 904 CDD WD40 624 904 - -
Phac1g00731 904 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 904 - -
Phac1g00731 904 Pfam LisH 10 36 IPR006594 GO:0005515
Phac1g00731 904 Pfam WD domain, G-beta repeat 625 651 IPR001680 GO:0005515
Phac1g00731 904 Pfam WD domain, G-beta repeat 783 817 IPR001680 GO:0005515
Phac1g00731 904 Pfam WD domain, G-beta repeat 659 694 IPR001680 GO:0005515
Phac1g00731 904 Pfam WD domain, G-beta repeat 867 904 IPR001680 GO:0005515
Phac1g00731 904 Pfam WD domain, G-beta repeat 701 738 IPR001680 GO:0005515
Phac1g00731 904 ProSiteProfiles Trp-Asp (WD) repeats profile. 872 904 IPR001680 GO:0005515
Phac1g00731 904 SMART Lish 8 40 IPR006594 GO:0005515
Phac1g00731 904 SUPERFAMILY WD40 repeat-like 616 904 IPR036322 GO:0005515
Phac1g00731 904 MobiDBLite consensus disorder prediction 145 185 - -
Phac1g00731 904 ProSiteProfiles Trp-Asp (WD) repeats profile. 620 651 IPR001680 GO:0005515
Phac1g00731 904 FunFam Transcriptional corepressor LEUNIG 748 904 - -
Phac1g00731 904 ProSitePatterns Trp-Asp (WD) repeats signature. 681 695 IPR019775 -
Phac1g00731 904 MobiDBLite consensus disorder prediction 253 272 - -
Phac1g00731 904 MobiDBLite consensus disorder prediction 467 537 - -
Phac1g00731 904 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 872 904 - -
Phac1g00731 904 MobiDBLite consensus disorder prediction 90 113 - -
Phac1g00731 904 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Phac1g00731 904 MobiDBLite consensus disorder prediction 420 544 - -
Phac1g00731 904 Coils Coil 119 142 - -
Phac1g00731 904 SMART WD40_4 824 863 IPR001680 GO:0005515
Phac1g00731 904 SMART WD40_4 655 694 IPR001680 GO:0005515
Phac1g00731 904 SMART WD40_4 698 738 IPR001680 GO:0005515
Phac1g00731 904 SMART WD40_4 613 652 IPR001680 GO:0005515
Phac1g00731 904 SMART WD40_4 741 777 IPR001680 GO:0005515
Phac1g00731 904 SMART WD40_4 865 904 IPR001680 GO:0005515
Phac1g00731 904 SMART WD40_4 780 818 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00731 Phac-Chr1 5970798 5985347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00731 699 903 Miscellaneous Gene Families AT5G08390 25.714 5.80e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Phac1g00731 WD40 0.081 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00731 - - gmx:100779972 1501.11