Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00635 ATGCTTTTCATTTTTGGTGGTTCCAATATCAAGGCATGTGTCCTATGTGGTTATGGAGGTGGAGCCATGACTCGAGCAACAATGAGTCACACGATTGTCAAGAGCCTCCTAAAAGTGTGGAATAGTGAGAAAGATGACATGCCTAAGCATACGACTTCATGTGAATTTTTTGAGGAGGAAATATATACATTCTCATCCTCAAAAGCTGATCAAGATAGTGCTTTGAAGCCCAAAATTTTTGATACATCAACAGATTTGGTGAAAGTTCAAATATCTACAAATAACACACAACACACCCCTACTACTCTTTATAGTTTCAAGGTACACAACAGCATTACTGAAGGAGTTCTTGATCCAACTGTTAAACAATGGATTCATATGGTTTGTGGTCTTTGGACTCCTGGAACAAGATGCCCAAATGTTGACACAATGAGTGCTTTTGATGTTTCTGGTGTTTCACGTCCCAGAGCAGATGTGGTTTGTTCCATTTGCAATCGATGGGGTGGTTCTTGTATAGAGTGCAGGATGGCTGATTGCTCTGTCAAGTTTCATCCCTGGTGTGCTCATCAAAAGAACCTGTTGCAAAGTGAGACTGAAGGCTTTGATGATGAGAAGATTGGATTTTATGGGAGTTGCATGCTACATACTATTGAACCTAGATATCTGTCCATATATGATCTTATTGATGAAATAGGAAGTCAAGAAGAAAAGGAGTTCACCTGTGCCAGGGCAGAGGGTTACAAGGGCAGAAGATGGGATGGTTTTCAGAATAATCACTGCCAAGGTGGATGCGTTGTTCCTGAGGAGCAGCTTAATGCTTGGATTCACATCAATGGGCAGAAATTATGTTCTCAAGGACTCACAAAATTCTCAGATTTGGATATGGAGCATAATTGTCGAAAGGAATACACTCGGTACAAACAAGCAAAGGGATGGAAACACCTCGTTGTATACAAGTCCCGTATACATGCACTTGGTCTTTACACTTCTCGATTCATTTCCCGGGGTGAAGTGGTGGTTGAATATGTCGGTGAAATTGTGGGATTGCGGGTGGCTGATAAAAGAGAGAAGGATTATCAATCTGGAAAGAAACTTCAGGACAAGAGTGCCTGCTACTTCTTCAGGATAGACAAAGAGCATATTATTGATGCCACAAGGAAAGGGGGAATTGCACGGTTTGTTAACCACTCATGCCTGCCAAATTGCGTGGCAAAAGTGATTACTGTAAGGCATGAAAAGAAGGTTGTCTTCTTTGCACAGAGGGATATATTTCCTGGTGAAGAGATTACATATGATTACCACTTTAACCACGAGGATGAAGGAAAGATTCCATGTTACTGCAATTCAAAAAATTGCAGGCGCTATATGAACTGA 1374 0.4112 MLFIFGGSNIKACVLCGYGGGAMTRATMSHTIVKSLLKVWNSEKDDMPKHTTSCEFFEEEIYTFSSSKADQDSALKPKIFDTSTDLVKVQISTNNTQHTPTTLYSFKVHNSITEGVLDPTVKQWIHMVCGLWTPGTRCPNVDTMSAFDVSGVSRPRADVVCSICNRWGGSCIECRMADCSVKFHPWCAHQKNLLQSETEGFDDEKIGFYGSCMLHTIEPRYLSIYDLIDEIGSQEEKEFTCARAEGYKGRRWDGFQNNHCQGGCVVPEEQLNAWIHINGQKLCSQGLTKFSDLDMEHNCRKEYTRYKQAKGWKHLVVYKSRIHALGLYTSRFISRGEVVVEYVGEIVGLRVADKREKDYQSGKKLQDKSACYFFRIDKEHIIDATRKGGIARFVNHSCLPNCVAKVITVRHEKKVVFFAQRDIFPGEEITYDYHFNHEDEGKIPCYCNSKNCRRYMN* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00635 457 SMART set_7 313 440 IPR001214 GO:0005515
Phac1g00635 457 ProSiteProfiles Post-SET domain profile. 441 457 IPR003616 -
Phac1g00635 457 CDD SET_SETD1-like 315 453 - -
Phac1g00635 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 216 IPR013083 -
Phac1g00635 457 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 12 457 - -
Phac1g00635 457 Pfam PHD-zinc-finger like domain 120 195 - -
Phac1g00635 457 ProSiteProfiles Extended PHD (ePHD) domain profile. 99 216 IPR034732 -
Phac1g00635 457 Gene3D SET domain 226 457 IPR046341 -
Phac1g00635 457 SMART PostSET_3 441 457 IPR003616 -
Phac1g00635 457 Pfam SET domain 326 433 IPR001214 GO:0005515
Phac1g00635 457 CDD ePHD 123 206 - -
Phac1g00635 457 ProSiteProfiles SET domain profile. 313 434 IPR001214 GO:0005515
Phac1g00635 457 SUPERFAMILY SET domain 283 453 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00635 Phac-Chr1 4983783 4988585 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00635 315 457 C2H2 Transcription Factor Family AT2G23740 33.129 1.12e-17 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phac1g00635 SET 7.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00635 - - vun:114194743 850.506