Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00619 ATGAGTAAGAGGAAGACCAGGATATGGCTTGGTACATTTGAAACAGCTGAGGATGCAGCTAGAGCCTATGATGAAGCAGCTAGGCTAATGTGTGGTGCCAGGGCAAGGACAAACTTCCCTTTCAACCCCAATGTCTCTCACACATCATCTTCTAGTTCAAAGCTTCTCTCAGCAACTTTGACTGCCAAACTGCACAGGTGCTACATGGCTTCTTTGCAAATGACAAGACAGGCTTTGGCATCATCTGAGTCTCAGAGAACACCTTCAGTGTCCAATGCCACTTCCACATCCCCACCTAGCAGCTTCAGTGTGAAGAGTGACCAAACTCATGAAGTGTTGCCACACAAGAGAGCAGAGGAGGGTCAAGACTCAGAGGCCAACAGGGGTGTTAAAATGGTCAGAGCTCTTGAAAGTGTTCCCCTGCAGTTCAAGCCTCTTGAAGAAGATCACATAGAGCAGATGATTGAGGAGCTTCTTGATTATGGCTCTGTTGAGCTTTGCTCTGTCTTTTCACCCCAGACCCTTTAA 528 0.4735 MSKRKTRIWLGTFETAEDAARAYDEAARLMCGARARTNFPFNPNVSHTSSSSSKLLSATLTAKLHRCYMASLQMTRQALASSESQRTPSVSNATSTSPPSSFSVKSDQTHEVLPHKRAEEGQDSEANRGVKMVRALESVPLQFKPLEEDHIEQMIEELLDYGSVELCSVFSPQTL* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00619 175 MobiDBLite consensus disorder prediction 79 127 - -
Phac1g00619 175 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 113 - -
Phac1g00619 175 Pfam AP2 domain 3 32 IPR001471 GO:0003700|GO:0006355
Phac1g00619 175 SUPERFAMILY DNA-binding domain 4 41 IPR016177 GO:0003677
Phac1g00619 175 SMART rav1_2 2 46 IPR001471 GO:0003700|GO:0006355
Phac1g00619 175 MobiDBLite consensus disorder prediction 79 108 - -
Phac1g00619 175 CDD AP2 3 40 IPR001471 GO:0003700|GO:0006355
Phac1g00619 175 MobiDBLite consensus disorder prediction 109 127 - -
Phac1g00619 175 Gene3D AP2/ERF domain 1 41 IPR036955 GO:0003700|GO:0006355
Phac1g00619 175 ProSiteProfiles AP2/ERF domain profile. 1 40 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00619 Phac-Chr1 4909213 4910674 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00619 5 175 AP2-EREBP Transcription Factor Family AT5G25190 57.803 2.52e-54 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phac1g00619 AP2 3.2e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00619 - - gmx:100785918 251.521