Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00618 ATGGCCAGACCACAACAGCGTTACCGAGGTGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCCATATTGAAGACCAGGATATGGCTTGGTACATTTGAAACAGCTGAGGATGCAGCTAGAGCCTATGATGAAGCAGCTAGGCTAATGTGTGGTGCCAGGGCAAGGACAAACTTCCCTTTCAACCCCAATGTCTCTCACACATCATCTTCTAGTTCAAAGCTTCTCTCAGCAACTTTGACTGCCAAACTGCACAGGTGCTACATGGCTTCTTTGCAAATGACAAGACAGGCTTTGGCATCATCTGAGTCTCAGAGAACACCTTCAGTGTCCAATGCCACTTCCACATCCCCACCTAGCAGCTTCAGTGTGAAGAGTGACCAAACTCATGAAGTGTTGCCACACAAGAGAGCAGAGGAGGGTCAAGACTCAGAGGCCAACAGGGGTGTTAAAATGGTCAGAGCTCTTGAAAGTGTTCCCCTGCAGTTCAAGCCTCTTGAAGAAGATCACATAGAGCAGATGATTGAGGAGCTTCTTGATTATGGCTCTGTTGAGCTTTGCTCTGTCTTTTCACCCCAGACCCTTTAA 600 0.4867 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGARARTNFPFNPNVSHTSSSSSKLLSATLTAKLHRCYMASLQMTRQALASSESQRTPSVSNATSTSPPSSFSVKSDQTHEVLPHKRAEEGQDSEANRGVKMVRALESVPLQFKPLEEDHIEQMIEELLDYGSVELCSVFSPQTL* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00618 199 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Phac1g00618 199 MobiDBLite consensus disorder prediction 103 151 - -
Phac1g00618 199 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Phac1g00618 199 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Phac1g00618 199 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Phac1g00618 199 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Phac1g00618 199 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Phac1g00618 199 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Phac1g00618 199 MobiDBLite consensus disorder prediction 133 151 - -
Phac1g00618 199 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Phac1g00618 199 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 132 - -
Phac1g00618 199 MobiDBLite consensus disorder prediction 103 132 - -
Phac1g00618 199 FunFam Ethylene-responsive transcription factor 2 6 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00618 Phac-Chr1 4909213 4910674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00618 1 199 AP2-EREBP Transcription Factor Family AT5G25190 63.184 2.40e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phac1g00618 AP2 6.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00618 - - gmx:100785918 312.383