Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00608 ATGACTTCCCACCATTGCTCAAAACATGTTTTTTCACATATGTGTGGTATCTTGCAACAGAAAGAGAATTCATGTCAAGCTTGCGGAGAAAAAGGAGATCTTCTGGGCTGTGAAACATGCAGCTACTCCTTCCATCCAAGTTGTGTAATCTCACCAGTTAGAATTCTCATTCGAGACAATTGGAGGTGCCCTTTTTGTGCTAGCCCAATGAGTGGTATTGATAAGATATTAGATTGTGAGATGCGTTCTGTGGTAGCAGCTGGTGAAAGTGATGCAACAAAGTTGGAGTCAAAGCAGACTCTTGTCAAGCAATATCTTGTTAAGTGGAAGGGACTCTCATATTTGCACTGCACATGGGTTCCTGAGGAAGAGTTTTTGAAGGCTTACAAGACTAAGCCAGGTCTAAAGATCAAAGTAAACAGCTTCCATCGTCGTATGGCATCAGCCAAGAATCCTACAGAAGATTTTGTTCCCATTAGATCTGAATGGACTACGGTTGATCGAATAATTGCTTGCAGTGGTAGCGATGACCAGAAGGAATATCTTGTGAAGTGGAAAGAGCTTCCATATGATGAGTGCTATTGGGAGCTGGAGTCAGATATCTCTGCATTTCAAACAGAAATAGAAAGATTCAACACATTTCAGTCTAGATCAAGGAAAGTTTCATCTAGTAAGAAAAGTAGTATTCAGGATGGTTCTGGATCGAATAATCTGCAGAAAGAATTTTTGCAGTACGAAAATAGCCCACAATTTCTCTCAGGGGGTTCACTGCATCCATATCAGCTTGAAGGATTGAACTTCTTACGATTTTCATGGTCCAAGCAAACTCATGTTATACTTGCTGATGAAATGGGGCTTGGAAAAACCATTCAAAGTATTGCTTTCTTAGCATCTCTTTTTGAAGAGAATGTTTCTCCACATCTGGTGGTTGCTCCACTTTCGACATTAAGAAACTGGGAACGTGAATTTGCAACTTGGGCACCTCACATGAATGTGGTTATGTATTTTGGATCTGCTAATGCTCGTGCTATAATCAGAGAGTATGAGTTTTACTTTCCGAAGAATCAAAAGGGGAAAAAGAAAAACAAATCTAAAAAAAGTGTTTATGACAGCAAACAAGGAAGGATAAAGTTTGATGTCCTTTTGACTTCATATGAGATGATAAATTCTGATTCATCTTCATTGAAACCTATAAAGTGGGAGAGCATGATAGTTGATGAGGGTCACCGTCTCAAAAACAAAAATTCTAGATTGTTTTCTTCATTGAAACAATATTCCACCAAACATCGTGTGCTTTTGACTGGAACTCCTCTTCAGAATAATTTGGATGAACTTTTTATGCTGATGCACTTCCTTGATGCTGGAAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAAGGATATCAACAGAGAGGAGCAGATTTTGAGACTGCATAAAATGTTGGCACCACATCTCTTGAGAAGAATGAAGAAAGATGTGTTGACGGAGCTACCTCCGAAGAAGGAACTTATTTTACGTGTTGAATTAAGCAGTCTACAGAAAGAATACTATAAGGCAATTTTGACACGTAATTATGAGATATTAACCCGCCAAGGTGGTGCACAAATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTGTGCTGCCATCCCTTCATGTTACAAGGAGTTCAACCTGATCTTAATGATGAAAAACAAGCATATGAGCAATTACTTGAATCATCTGGGAAGCTGCAATTGTTAGACAAGCTGATGGTGAAACTTAAAGAGCAAGGTCATAGAGTCCTTATATATTCCCAATTTCAGAGAATGCTTGACTTACTTGAAGATTACTGTTCTTTCAAGCAATGGCAATATGAGAGGATAGATGGCAAGGTTGGAGGTGCTGAAAGACAAGTAAAGATAGATTGGTTTAATGCTGAAGATTCTTCAAGATTTTGTTTCCTTCTATCTACTAGAGCTGGGGGTTTGGGGATAAACCTTACTACAGCTGACACAGTTATTCTATACGACAGTGACTGGAATCCCCACGCTGATTTACAAGCCATGGCCAGGGCGCATCGCCTAGGACAAACGAGGAAGGTCATGGTGTATAGGCTTATAACCAGAGGAACAATTGAAGAGAAGATGATTCAGATGACCAAGAAAAAAATGGTCTTAGAACATCTGGTTGTAGGCAGGCTACAGTCTGAAAACATCAAACAGGAGGAGCTAGATGATATTGTAAGATACGGCTCAGAAGAGTTATTTGCTGATGAAAATGATGAAGCAGGCAAATCTCGCCAAATTCATTACGATGCTGATGCAATCGATAGGTTGCTGAATCGTGATGAAGTTGGTAATGAAGAGGTGCCTGCTTTGGATGGTGAAGATGAAGATGGATTTCTGAAGGCCTTCAAGGTAGCAAATTTTGAATACATCGAGGAGGCTGAGGCAGCAGAGGAGGTGGCAGAAAATGTAGCAACTGAGAATCAATCCTCTGCTGCCAGTTTGAAAAAAGCAAATCACTGGGAAGAGCTGTTGAAAGAAAGATATGAACAACAGAGAGCTGAAGAGTTAAATGCCTTAGGCAAAGGGAAGCGAACCTGCACCATGTGGCAGGGAGAAGGCTCTACTCGTTGGGGAGATCTAAGCTCCGATGGTGAAGATGTTAAAGATGACAACTATGAAGTGGATCTTAGTGAGGATGATTCAACTTCATTTGATACTACCAGAAGTCCTCACAAAACCAAAGTTCGCGCAGAGAGCCCAGAGCCACTTCCATTAATGGAAGGGCAAGGAAGATCGCTGAAAGTACTTGGTTTTAGTCAAAATCAAAGGGCTGATTTTCTTCAAATTTTGATGAGATTTGGAGTGGGTGATTTTGACTGGTCAGAGTTTACTGCCCGCATGAAACAGAAGAGTTTTGAAGAAATCCACGAGTATGGACAACTCTTTTTGTCTCATATTGCGGAAGAAATTACTGATTCCCCTACATTCACAGATGGAGTTCCAAAAGAAGGACTTCAAATACCAGATGTGCTTGTAAGGATTGCAGCTCTGATCTTGATAAGAGACAAAGTGAAGTTTATATCAGAAAATCCTGGAACTTCACTTTTTTCAGATGATATCTTATCACGCTATCCAGGTCTGAAGGGTACAAAGATCTGGAAGGAGGAGCATGATGTAGTGCTACTGCATGCCATGTTGAAGCATGGTTATGCAAGGTGGCATGATATTGCTGAAGATAAGGATCTGAATCTTCAGAAGGTTATATGTCAGGAGTTAAATATTCCAGTTGTAGATGTACCAGTTCAACTACAGTCTGATATGACAAATGTGCAGTCTAGCTGCAGCCCATCTGGTGAGTATGTTAGGACTGACATTGCAACTGACGGTGCAAATATGACAAACGTGCAATCGAGCTTCATCAAATCTAAGAGTGGTGCGCGTGGTTCTAGTCATCGTCGGGAGCAAGTCCAAGCATTCCGTAAGTCCGAGGTGTGGCATGAGTATAGACAAATGCAGAAAGCACAGACTGAGTTTATAAAGAAAAGGTTTCGTCTCTTGGAAAAAGGTCTCAACGCTGAGTGCCAGAAAGAGTACTATAGTGATTCGAAACCAAATGAACTGGATACTAAAGAACTTGAAGGTAATGGCACACGTGTAGCTGTCCCAGAGTATATCGTATCTGAGACAGACGAAAGTGTGGATGATCCTCTGCCTCAAGTCAAAAGAATAGACACAGAGGATATTTATACTTCTGCATGTGACTTTGAACAAGATCGCCTGCAATTAGTATCTCTCTACAATGAGATTTGCTCAACTGTGGAGGAAAGCGCCATTGGTTTAGTCGAAACGGCAACAGAACAGGCACAAGAGCACGCTATTGAGAACTTGGGTCTAATCCAAAGCATTTCTGCAGATGTCATTGCAATTCTAAAGGGTAAAGACACTGCAGATTAA 3954 0.4072 MTSHHCSKHVFSHMCGILQQKENSCQACGEKGDLLGCETCSYSFHPSCVISPVRILIRDNWRCPFCASPMSGIDKILDCEMRSVVAAGESDATKLESKQTLVKQYLVKWKGLSYLHCTWVPEEEFLKAYKTKPGLKIKVNSFHRRMASAKNPTEDFVPIRSEWTTVDRIIACSGSDDQKEYLVKWKELPYDECYWELESDISAFQTEIERFNTFQSRSRKVSSSKKSSIQDGSGSNNLQKEFLQYENSPQFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEENVSPHLVVAPLSTLRNWEREFATWAPHMNVVMYFGSANARAIIREYEFYFPKNQKGKKKNKSKKSVYDSKQGRIKFDVLLTSYEMINSDSSSLKPIKWESMIVDEGHRLKNKNSRLFSSLKQYSTKHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINREEQILRLHKMLAPHLLRRMKKDVLTELPPKKELILRVELSSLQKEYYKAILTRNYEILTRQGGAQISLINVVMELRKLCCHPFMLQGVQPDLNDEKQAYEQLLESSGKLQLLDKLMVKLKEQGHRVLIYSQFQRMLDLLEDYCSFKQWQYERIDGKVGGAERQVKIDWFNAEDSSRFCFLLSTRAGGLGINLTTADTVILYDSDWNPHADLQAMARAHRLGQTRKVMVYRLITRGTIEEKMIQMTKKKMVLEHLVVGRLQSENIKQEELDDIVRYGSEELFADENDEAGKSRQIHYDADAIDRLLNRDEVGNEEVPALDGEDEDGFLKAFKVANFEYIEEAEAAEEVAENVATENQSSAASLKKANHWEELLKERYEQQRAEELNALGKGKRTCTMWQGEGSTRWGDLSSDGEDVKDDNYEVDLSEDDSTSFDTTRSPHKTKVRAESPEPLPLMEGQGRSLKVLGFSQNQRADFLQILMRFGVGDFDWSEFTARMKQKSFEEIHEYGQLFLSHIAEEITDSPTFTDGVPKEGLQIPDVLVRIAALILIRDKVKFISENPGTSLFSDDILSRYPGLKGTKIWKEEHDVVLLHAMLKHGYARWHDIAEDKDLNLQKVICQELNIPVVDVPVQLQSDMTNVQSSCSPSGEYVRTDIATDGANMTNVQSSFIKSKSGARGSSHRREQVQAFRKSEVWHEYRQMQKAQTEFIKKRFRLLEKGLNAECQKEYYSDSKPNELDTKELEGNGTRVAVPEYIVSETDESVDDPLPQVKRIDTEDIYTSACDFEQDRLQLVSLYNEICSTVEESAIGLVETATEQAQEHAIENLGLIQSISADVIAILKGKDTAD* 1318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00608 1317 Gene3D - 249 499 IPR038718 -
Phac1g00608 1317 CDD CD1_tandem 73 144 - -
Phac1g00608 1317 Gene3D - 70 158 - -
Phac1g00608 1317 SMART DUF1087_2 814 889 IPR009463 -
Phac1g00608 1317 Gene3D - 159 213 - -
Phac1g00608 1317 SUPERFAMILY Chromo domain-like 151 216 IPR016197 -
Phac1g00608 1317 MobiDBLite consensus disorder prediction 873 924 - -
Phac1g00608 1317 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 269 455 IPR014001 -
Phac1g00608 1317 ProSiteProfiles Chromo and chromo shadow domain profile. 71 154 IPR000953 -
Phac1g00608 1317 SMART DUF1086_2 885 1041 IPR009462 GO:0003677|GO:0006338
Phac1g00608 1317 MobiDBLite consensus disorder prediction 901 918 - -
Phac1g00608 1317 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 70 1213 - -
Phac1g00608 1317 CDD SF2_C_SNF 578 704 - -
Phac1g00608 1317 SMART ultradead3 253 466 IPR014001 -
Phac1g00608 1317 Gene3D - 500 724 IPR027417 -
Phac1g00608 1317 ProSitePatterns Zinc finger PHD-type signature. 25 66 IPR019786 -
Phac1g00608 1317 SMART chromo_7 162 216 IPR000953 -
Phac1g00608 1317 SMART chromo_7 71 134 IPR000953 -
Phac1g00608 1317 Pfam Chromo (CHRromatin Organisation MOdifier) domain 97 128 IPR023780 -
Phac1g00608 1317 Pfam Chromo (CHRromatin Organisation MOdifier) domain 165 212 IPR023780 -
Phac1g00608 1317 Gene3D - 1008 1197 - -
Phac1g00608 1317 SMART helicmild6 609 693 IPR001650 -
Phac1g00608 1317 ProSiteProfiles Zinc finger PHD-type profile. 22 69 IPR019787 -
Phac1g00608 1317 CDD CD2_tandem 162 211 - -
Phac1g00608 1317 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 583 742 IPR001650 -
Phac1g00608 1317 Pfam CHD subfamily II, SANT-like domain 906 1038 IPR009462 GO:0003677|GO:0006338
Phac1g00608 1317 Pfam SNF2-related domain 277 556 IPR000330 GO:0005524|GO:0140658
Phac1g00608 1317 SUPERFAMILY Chromo domain-like 37 150 IPR016197 -
Phac1g00608 1317 ProSiteProfiles Chromo and chromo shadow domain profile. 164 226 IPR000953 -
Phac1g00608 1317 Pfam PHD-finger 25 67 IPR019787 -
Phac1g00608 1317 SMART PHD_3 24 67 IPR001965 -
Phac1g00608 1317 Pfam Helicase conserved C-terminal domain 580 693 IPR001650 -
Phac1g00608 1317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 69 IPR013083 -
Phac1g00608 1317 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 747 IPR027417 -
Phac1g00608 1317 Pfam CHD subfamily II, DUF1087 815 865 IPR009463 -
Phac1g00608 1317 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 490 IPR027417 -
Phac1g00608 1317 Coils Coil 460 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00608 Phac-Chr1 4739068 4749685 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00608 578 744 RAD5 or RAD16-like Gene Family AT5G43530 35.503 2.91e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac1g00608 SNF2_N 1.5e-63 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00608 K11643 - gmx:100804203 1756.5