Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00606 ATGAGTAGCTCAATTAAGCTTCGTGAAAGATCCGAATGTAGACCCCGTTATAGCTTTGATGTGTCAGATGAGGAGGATGAAGTTATATCCCCTAGAAAACTTGGGAAATCTACAGAAAATGATGTTGAAATTGATGGAAATGATACTAATGTTGAAGGGCTTCGTGGAAGATCGAGTCAAAGGAAGAAAAAATATACTATTGATGATTCTGATGACGACGATTCAGTTATTCTCCCTAGGAAACGTGGGAGACCTAAAAAAATAAATAAGAAAATTGATACAAGTGATACTAATGAGAGTGGCTTGGTTGAACGGCTTCGTGAAAGATCCTGTAAAAAGAAGCCAAATTATATTCTTTATGAGTCAGATGAAGATGAGGATATTTTACTTAGCAAAAACCTTGAAGAAACCATTGGGAAAATTGAAAGAAGTGACACTAAAGAGAATTCATGTCAAGCTTGCGGAGAAAAAGGAGATCTTCTGGGCTGTGAAACATGCAGCTACTCCTTCCATCCAAGTTGTGTAATCTCACCAGTTAGAATTCTCATTCGAGACAATTGGAGGTGCCCTTTTTGTGCTAGCCCAATGAGTGGTATTGATAAGATATTAGATTGTGAGATGCGTTCTGTGGTAGCAGCTGGTGAAAGTGATGCAACAAAGTTGGAGTCAAAGCAGACTCTTGTCAAGCAATATCTTGTTAAGTGGAAGGGACTCTCATATTTGCACTGCACATGGGTTCCTGAGGAAGAGTTTTTGAAGGCTTACAAGACTAAGCCAGGTCTAAAGATCAAAGTAAACAGCTTCCATCGTCGTATGGCATCAGCCAAGAATCCTACAGAAGATTTTGTTCCCATTAGATCTGAATGGACTACGGTTGATCGAATAATTGCTTGCAGTGGTAGCGATGACCAGAAGGAATATCTTGTGAAGTGGAAAGAGCTTCCATATGATGAGTGCTATTGGGAGCTGGAGTCAGATATCTCTGCATTTCAAACAGAAATAGAAAGATTCAACACATTTCAGTCTAGATCAAGGAAAGTTTCATCTAGTAAGAAAAGTAGTATTCAGGATGGTTCTGGATCGAATAATCTGCAGAAAGAATTTTTGCAGTACGAAAATAGCCCACAATTTCTCTCAGGGGGTTCACTGCATCCATATCAGCTTGAAGGATTGAACTTCTTACGATTTTCATGGTCCAAGCAAACTCATGTTATACTTGCTGATGAAATGGGGCTTGGAAAAACCATTCAAAGTATTGCTTTCTTAGCATCTCTTTTTGAAGAGAATGTTTCTCCACATCTGGTGGTTGCTCCACTTTCGACATTAAGAAACTGGGAACGTGAATTTGCAACTTGGGCACCTCACATGAATGTGGTTATGTATTTTGGATCTGCTAATGCTCGTGCTATAATCAGAGAGTATGAGTTTTACTTTCCGAAGAATCAAAAGGGGAAAAAGAAAAACAAATCTAAAAAAAGTGTTTATGACAGCAAACAAGGAAGGATAAAGTTTGATGTCCTTTTGACTTCATATGAGATGATAAATTCTGATTCATCTTCATTGAAACCTATAAAGTGGGAGAGCATGATAGTTGATGAGGGTCACCGTCTCAAAAACAAAAATTCTAGATTGTTTTCTTCATTGAAACAATATTCCACCAAACATCGTGTGCTTTTGACTGGAACTCCTCTTCAGAATAATTTGGATGAACTTTTTATGCTGATGCACTTCCTTGATGCTGGAAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAAGGATATCAACAGAGAGGAGCAGATTTTGAGACTGCATAAAATGTTGGCACCACATCTCTTGAGAAGAATGAAGAAAGATGTGTTGACGGAGCTACCTCCGAAGAAGGAACTTATTTTACGTGTTGAATTAAGCAGTCTACAGAAAGAATACTATAAGGCAATTTTGACACGTAATTATGAGATATTAACCCGCCAAGGTGGTGCACAAATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTGTGCTGCCATCCCTTCATGTTACAAGGAGTTCAACCTGATCTTAATGATGAAAAACAAGCATATGAGCAATTACTTGAATCATCTGGGAAGCTGCAATTGTTAGACAAGCTGATGGTGAAACTTAAAGAGCAAGGTCATAGAGTCCTTATATATTCCCAATTTCAGAGAATGCTTGACTTACTTGAAGATTACTGTTCTTTCAAGCAATGGCAATATGAGAGGATAGATGGCAAGGTTGGAGGTGCTGAAAGACAAGTAAAGATAGATTGGTTTAATGCTGAAGATTCTTCAAGATTTTGTTTCCTTCTATCTACTAGAGCTGGGGGTTTGGGGATAAACCTTACTACAGCTGACACAGTTATTCTATACGACAGTGACTGGAATCCCCACGCTGATTTACAAGCCATGGCCAGGGCGCATCGCCTAGGACAAACGAGGAAGGTCATGGTGTATAGGCTTATAACCAGAGGAACAATTGAAGAGAAGATGATTCAGATGACCAAGAAAAAAATGGTCTTAGAACATCTGGTTGTAGGCAGGCTACAGTCTGAAAACATCAAACAGGAGGAGCTAGATGATATTGTAAGATACGGCTCAGAAGAGTTATTTGCTGATGAAAATGATGAAGCAGGCAAATCTCGCCAAATTCATTACGATGCTGATGCAATCGATAGGTTGCTGAATCGTGATGAAGTTGGTAATGAAGAGGTGCCTGCTTTGGATGGTGAAGATGAAGATGGATTTCTGAAGGCCTTCAAGGTAGCAAATTTTGAATACATCGAGGAGGCTGAGGCAGCAGAGGAGGTGGCAGAAAATGTAGCAACTGAGAATCAATCCTCTGCTGCCAGTTTGAAAAAAGCAAATCACTGGGAAGAGCTGTTGAAAGAAAGATATGAACAACAGAGAGCTGAAGAGTTAAATGCCTTAGGCAAAGGGAAGCGAACCTGCACCATGTGGCAGGGAGAAGGCTCTACTCGTTGGGGAGATCTAAGCTCCGATGGTGAAGATGTTAAAGATGACAACTATGAAGTGGATCTTAGTGAGGATGATTCAACTTCATTTGATACTACCAGAAGTCCTCACAAAACCAAAGTTCGCGCAGAGAGCCCAGAGCCACTTCCATTAATGGAAGGGCAAGGAAGATCGCTGAAAGTACTTGGTTTTAGTCAAAATCAAAGGGCTGATTTTCTTCAAATTTTGATGAGATTTGGAGTGGGTGATTTTGACTGGTCAGAGTTTACTGCCCGCATGAAACAGAAGAGTTTTGAAGAAATCCACGAGTATGGACAACTCTTTTTGTCTCATATTGCGGAAGAAATTACTGATTCCCCTACATTCACAGATGGAGTTCCAAAAGAAGGACTTCAAATACCAGATGTGCTTGTAAGGATTGCAGCTCTGATCTTGATAAGAGACAAAGTGAAGTTTATATCAGAAAATCCTGGAACTTCACTTTTTTCAGATGATATCTTATCACGCTATCCAGGTCTGAAGGGTACAAAGATCTGGAAGGAGGAGCATGATGTAGTGCTACTGCATGCCATGTTGAAGCATGGTTATGCAAGGTGGCATGATATTGCTGAAGATAAGGATCTGAATCTTCAGAAGGTTATATGTCAGGAGTTAAATATTCCAGTTGTAGATGTACCAGTTCAACTACAGTCTGATATGACAAATGTGCAGTCTAGCTGCAGCCCATCTGGTGAGTATGTTAGGACTGACATTGCAACTGACGGTGCAAATATGACAAACGTGCAATCGAGCTTCATCAAATCTAAGAGTGGTGCGCGTGGTTCTAGTCATCGTCGGGAGCAAGTCCAAGCATTCCGTAAGTCCGAGGTGTGGCATGAGTATAGACAAATGCAGAAAGCACAGACTGAGTTTATAAAGAAAAGGTTTCGTCTCTTGGAAAAAGGTCTCAACGCTGAGTGCCAGAAAGAGTACTATAGTGATTCGAAACCAAATGAACTGGATACTAAAGAACTTGAAGGTAATGGCACACGTGTAGCTGTCCCAGAGTATATCGTATCTGAGACAGACGAAAGTGTGGATGATCCTCTGCCTCAAGTCAAAAGAATAGGTACAATGCTATGCTATTCACTTTTGTTTCTCTCATGCTCAAACCGTAGCAATTGTCTATTTTGCATCAGATTATGTAGTGCTGTTTTCTCTTTATATTCATTTTGTTTCGGTATTTTTCTTTGA 4233 0.3995 MSSSIKLRERSECRPRYSFDVSDEEDEVISPRKLGKSTENDVEIDGNDTNVEGLRGRSSQRKKKYTIDDSDDDDSVILPRKRGRPKKINKKIDTSDTNESGLVERLRERSCKKKPNYILYESDEDEDILLSKNLEETIGKIERSDTKENSCQACGEKGDLLGCETCSYSFHPSCVISPVRILIRDNWRCPFCASPMSGIDKILDCEMRSVVAAGESDATKLESKQTLVKQYLVKWKGLSYLHCTWVPEEEFLKAYKTKPGLKIKVNSFHRRMASAKNPTEDFVPIRSEWTTVDRIIACSGSDDQKEYLVKWKELPYDECYWELESDISAFQTEIERFNTFQSRSRKVSSSKKSSIQDGSGSNNLQKEFLQYENSPQFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEENVSPHLVVAPLSTLRNWEREFATWAPHMNVVMYFGSANARAIIREYEFYFPKNQKGKKKNKSKKSVYDSKQGRIKFDVLLTSYEMINSDSSSLKPIKWESMIVDEGHRLKNKNSRLFSSLKQYSTKHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINREEQILRLHKMLAPHLLRRMKKDVLTELPPKKELILRVELSSLQKEYYKAILTRNYEILTRQGGAQISLINVVMELRKLCCHPFMLQGVQPDLNDEKQAYEQLLESSGKLQLLDKLMVKLKEQGHRVLIYSQFQRMLDLLEDYCSFKQWQYERIDGKVGGAERQVKIDWFNAEDSSRFCFLLSTRAGGLGINLTTADTVILYDSDWNPHADLQAMARAHRLGQTRKVMVYRLITRGTIEEKMIQMTKKKMVLEHLVVGRLQSENIKQEELDDIVRYGSEELFADENDEAGKSRQIHYDADAIDRLLNRDEVGNEEVPALDGEDEDGFLKAFKVANFEYIEEAEAAEEVAENVATENQSSAASLKKANHWEELLKERYEQQRAEELNALGKGKRTCTMWQGEGSTRWGDLSSDGEDVKDDNYEVDLSEDDSTSFDTTRSPHKTKVRAESPEPLPLMEGQGRSLKVLGFSQNQRADFLQILMRFGVGDFDWSEFTARMKQKSFEEIHEYGQLFLSHIAEEITDSPTFTDGVPKEGLQIPDVLVRIAALILIRDKVKFISENPGTSLFSDDILSRYPGLKGTKIWKEEHDVVLLHAMLKHGYARWHDIAEDKDLNLQKVICQELNIPVVDVPVQLQSDMTNVQSSCSPSGEYVRTDIATDGANMTNVQSSFIKSKSGARGSSHRREQVQAFRKSEVWHEYRQMQKAQTEFIKKRFRLLEKGLNAECQKEYYSDSKPNELDTKELEGNGTRVAVPEYIVSETDESVDDPLPQVKRIGTMLCYSLLFLSCSNRSNCLFCIRLCSAVFSLYSFCFGIFL* 1411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00606 1410 SUPERFAMILY Chromo domain-like 163 276 IPR016197 -
Phac1g00606 1410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 196 IPR013083 -
Phac1g00606 1410 MobiDBLite consensus disorder prediction 1027 1044 - -
Phac1g00606 1410 Pfam CHD subfamily II, SANT-like domain 1032 1164 IPR009462 GO:0003677|GO:0006338
Phac1g00606 1410 SMART DUF1087_2 940 1015 IPR009463 -
Phac1g00606 1410 SMART chromo_7 288 342 IPR000953 -
Phac1g00606 1410 SMART chromo_7 197 260 IPR000953 -
Phac1g00606 1410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 618 873 IPR027417 -
Phac1g00606 1410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 616 IPR027417 -
Phac1g00606 1410 MobiDBLite consensus disorder prediction 55 81 - -
Phac1g00606 1410 MobiDBLite consensus disorder prediction 7 43 - -
Phac1g00606 1410 SUPERFAMILY Chromo domain-like 277 342 IPR016197 -
Phac1g00606 1410 Gene3D - 375 625 IPR038718 -
Phac1g00606 1410 SMART PHD_3 150 193 IPR001965 -
Phac1g00606 1410 Pfam Chromo (CHRromatin Organisation MOdifier) domain 223 254 IPR023780 -
Phac1g00606 1410 Pfam Chromo (CHRromatin Organisation MOdifier) domain 291 338 IPR023780 -
Phac1g00606 1410 CDD SF2_C_SNF 704 830 - -
Phac1g00606 1410 CDD CD2_tandem 288 337 - -
Phac1g00606 1410 SMART helicmild6 735 819 IPR001650 -
Phac1g00606 1410 Gene3D - 626 850 IPR027417 -
Phac1g00606 1410 Gene3D - 1134 1323 - -
Phac1g00606 1410 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 21 1318 - -
Phac1g00606 1410 Gene3D - 281 339 - -
Phac1g00606 1410 ProSitePatterns Zinc finger PHD-type signature. 151 192 IPR019786 -
Phac1g00606 1410 Pfam CHD subfamily II, DUF1087 941 991 IPR009463 -
Phac1g00606 1410 Pfam SNF2-related domain 403 682 IPR000330 GO:0005524|GO:0140658
Phac1g00606 1410 Gene3D - 197 273 - -
Phac1g00606 1410 SMART DUF1086_2 1011 1167 IPR009462 GO:0003677|GO:0006338
Phac1g00606 1410 Pfam PHD-finger 151 193 IPR019787 -
Phac1g00606 1410 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 709 868 IPR001650 -
Phac1g00606 1410 Pfam Helicase conserved C-terminal domain 706 819 IPR001650 -
Phac1g00606 1410 ProSiteProfiles Chromo and chromo shadow domain profile. 197 280 IPR000953 -
Phac1g00606 1410 MobiDBLite consensus disorder prediction 1 95 - -
Phac1g00606 1410 Coils Coil 586 606 - -
Phac1g00606 1410 CDD CD1_tandem 199 270 - -
Phac1g00606 1410 ProSiteProfiles Chromo and chromo shadow domain profile. 290 352 IPR000953 -
Phac1g00606 1410 ProSiteProfiles Zinc finger PHD-type profile. 148 195 IPR019787 -
Phac1g00606 1410 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 395 581 IPR014001 -
Phac1g00606 1410 SMART ultradead3 379 592 IPR014001 -
Phac1g00606 1410 MobiDBLite consensus disorder prediction 999 1050 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00606 Phac-Chr1 4735398 4749685 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00606 704 870 RAD5 or RAD16-like Gene Family AT5G43530 35.503 3.93e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac1g00606 SNF2_N 1.6e-63 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00606 K11643 - gmx:100804203 1747.25