Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00601 ATGGCAAACTTCCACCGTAACAACGTCGAGCATGTGGTCCTCGGCCACCACCGTTCCAAGAACACCTCCGTCACCGGTGGCCACTTCCGCCTATGGCACTCCCTCTCCACGGCCTCCTTCCGCCGCCTCGTCTTCGATGCTGTCAGCTGCGGCGCCAGCTCCCGCTATACTGTGAGATCCGATACGTCCTCCGAGAGACACCACCACCAACCGAAACAACAGCTCCAGCACAAGAGGAAGCCGAATAACACGAAGTCGGAGAAGCTTTCGGATCTGCTGAACCTCGCGGAGGTCGAGGCTGACTTGGAAACGAAGAAGAAAGAGGACAAGCTCGAGGAGCTGAAGAGCCTAGTGAAGGAGCTTCAGAAGGAAGATGAGGAAGAGAAAGAAGAAGAATCAATGAAGCGGAGAAGAGAAGCTGCTTCGAAAATGAGGTTGCTAGCAAAAGAGGATTTGGAAGTTAGAGGAACGCTTGCTATGCTTGGAGCTATTCCTACTCTCGTCGCAATGCTCGATGAATGCAAAAACGATGTCGATTCGCTAGTGGCTTCTCTCTACGCCCTGCTCAACCTCGGAATCGGAAACGACGCGAATAAATCCGCTATTGTGAAAGTTGGATCAGTTGAGAAGATGCTGAACCTGATTGAATCTCGAGATGGTCTAGATTCTTCGGTTTCTGAAGCAATTGTGGCTAATTTCCTTGGACTTAGTGCTTTAGATTCAAATAAGCCCATAATTGGGTCTTCGGCTTCAATTTCTTTCTTAGTTAAAACCCTTCAGAGTTTAGACGACAATAGAAGTCCCCAAGCCAAGCAAGATGCTCTAAGGGCATTGTATAATCTTTCTATCTACCCAGCCAATGTTGCATTCGTTTTGGAAACAGATTTGGTTCTGTTTCTGGTGAACTCAATAGGGGACATGGAGGTAACTGAAAGAGCTCTTGCAATTCTCAGCAACTTGGTGACGACTCGAGATGGTAGAAAGGCGATTGGTGTAGTGCAAGATTCCATTCCGATCCTGGTGGATGTGTTGAATTGGACAGATTCACCAGAATGCCAGGAGAAGGCATCGTACATTTTGATGGTTATGGCACACAAATCCTATAGGGACAAACAGGCCATGATTGAGGCAGGGATTGCGTCATCACTGCTTGAGTTGTCCCTTTTGGGTACCACATTAGCTCAGAAAAGGGCATCAAGGATACTGGAAATTTTGAGGGTGGACAAAGGGAAACAGATTTCTGGGAGCTATGCCTTGGGTGCTGCTGTCTCTGCCCCTATTTGTGGCTCTTCGTCCGCCAAGCAGGATGACGGAGGTAGGGAGTGTTTTGACGAGGAGGAAGATATGATGAGTGAGGAGAAGAAAGCAGTGAAGCAACTAGTCCAGCAGAGTTTGCAGAACAACATGAGGAAAATTGTAAAAAGGGCCAATTTGCCTCACGATATTGTTCCATCGGATCATTTTAAGTCACTCACCTCAAGTTCTACTTCAAAGAGCCTACCATTTTGA 1509 0.4778 MANFHRNNVEHVVLGHHRSKNTSVTGGHFRLWHSLSTASFRRLVFDAVSCGASSRYTVRSDTSSERHHHQPKQQLQHKRKPNNTKSEKLSDLLNLAEVEADLETKKKEDKLEELKSLVKELQKEDEEEKEEESMKRRREAASKMRLLAKEDLEVRGTLAMLGAIPTLVAMLDECKNDVDSLVASLYALLNLGIGNDANKSAIVKVGSVEKMLNLIESRDGLDSSVSEAIVANFLGLSALDSNKPIIGSSASISFLVKTLQSLDDNRSPQAKQDALRALYNLSIYPANVAFVLETDLVLFLVNSIGDMEVTERALAILSNLVTTRDGRKAIGVVQDSIPILVDVLNWTDSPECQEKASYILMVMAHKSYRDKQAMIEAGIASSLLELSLLGTTLAQKRASRILEILRVDKGKQISGSYALGAAVSAPICGSSSAKQDDGGRECFDEEEDMMSEEKKAVKQLVQQSLQNNMRKIVKRANLPHDIVPSDHFKSLTSSSTSKSLPF* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00601 502 Coils Coil 443 463 - -
Phac1g00601 502 Gene3D - 113 261 IPR011989 -
Phac1g00601 502 SUPERFAMILY ARM repeat 113 405 IPR016024 -
Phac1g00601 502 Gene3D - 262 417 IPR011989 -
Phac1g00601 502 MobiDBLite consensus disorder prediction 483 502 - -
Phac1g00601 502 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 22 502 - -
Phac1g00601 502 MobiDBLite consensus disorder prediction 56 87 - -
Phac1g00601 502 SMART arm_5 151 193 IPR000225 GO:0005515
Phac1g00601 502 SMART arm_5 284 322 IPR000225 GO:0005515
Phac1g00601 502 SMART arm_5 324 365 IPR000225 GO:0005515
Phac1g00601 502 SMART arm_5 195 238 IPR000225 GO:0005515
Phac1g00601 502 SMART arm_5 239 283 IPR000225 GO:0005515
Phac1g00601 502 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 162 206 IPR000225 GO:0005515
Phac1g00601 502 MobiDBLite consensus disorder prediction 487 502 - -
Phac1g00601 502 Coils Coil 104 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00601 Phac-Chr1 4686736 4690561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00601 111 406 U-box Gene Family AT2G23140 33.333 1.74e-32 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00601 - - gmx:100808483 685.256