Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00540 ATGGCATTGTTCCGCAAGTTCTTCTATAAGAAGCCCCCAGATGGGCTTCTAGAAATCACTGAAAGGGTTTATGGTACGCTTCCTGTTGCCTCATTTTCTGTGAACTCATTGGTTCTGGTGGAAGTGAACAGTGTTGTCTTTGATTACTGCTTTACCACGGATGTTATGGAAGAAGAAGAATATAGAGTGTATATAGGAGGAATAATTGGGCAACTTCGTGGTCACTTCCCTGATGCTTCATTTATGGTGTTCAACATGAGGGAGGGAGACAGCCAAAGCCAGATTTCAAACATTTTGTGCGACTATGATATGACTGTGATAGACTATCCTCGACAGTATGAAGGTTGCCCGTTGCTTACCATGGAGATGATCCATCATTTCTTGAGATCAGGTGAAAACTGGCTTCAACTTGGACAACAAAATGTTGTCTTGATGCATTGTGAACGAGGTGGGTGGCCGTTATTAGCATTCATGCTGGCTGCACTCTTGATTTATAGAAAGATGTTTACAGGGGAGCAGAAAACACTAGACATGATATACAAGCAAGCTCCTCGGGAACTTCTGCAGTTGATGTCACCATTGAATCCTTTACCTTCACAATTGAGATATCTTCAGTATATATCAAGAAGAAATGTTGGTTCAGAATGGCCTCCTCTTGATAGGGCACTTACTTTGGACTGTGTAATTATAAGACTCATTCCTAACATGGGTGGAGAGGGTGGCTGCCGTCCTATATTTAGAATATATGGACAAGACCCTTTTATTCCTGCAGATCGAACTCCCAAAGTTCTCTTTTCAACTCCAAAAAGGAGCAAACTTGTTCGCTATTGTAAGCAGACTGATTGTGAACTGGTTAAGATTGACATCCACTGTCATGTTCAAGGTGATGTCGTTTTTGAGTGTATTCATCTGCACAGTGATTTAGAGCATGAAGAAATGATGTTTCGGGTGATGTTTAATACAGCATTCATAAGATCAAATATTTTGATGCTTAACCGTGATGAAATTGACATACTATGGAATGCTAAAGATTACTTCCCTAAAAATTTTAGAGTGGAGGTTCTTTTCTCAGATATGGATGCATCATCTTCTGTTATTTCACTTGATCTGCCTCGTATTGAGGAGAAAGAAGGCCTCCCTGTTGAAGCATTTGCAAAGGTCAAGGAGATTTTCAGCAACGTGGATTGGCTAGATTCGAAGGAAGAAGTAGCAAGTGTGCTCCAACAGATCACAGCTTCAAATATCCTTCTGGAAAGATTGGACACTGGGGTTTCTGCTGCAACAAGTGGCTTTCTAATGGAGTCATCTGAAAAGTTTACAGCTGTTTCAAAGCCACACAGTGATACAAGCAATCTGACTTCTGCAGTTCAGGGGATACATTCTACGTCCTCATTGGGATCGTCTGTGGATGTTGCTATGGAAAATAAGACTGAACCATTGGAATCAAAGACATTGTCCGAAAATGACATTGAGACTCTTGAATGTTCAGGTCACAGGAACCAACAACCTATTCACTCATTTGGGCTCACAAAAGATTCTAGTTCTACTGAAAGGCCAGTTGAATTGTTCGAATCAAAGACATCTGTGGAAAACGATGCCAAGGTTCCAACATCTATGGCTCATGTGGAGCAGTCAATGTCCTCAACTGGACCATCTAAGGATGCCAATTCAATGACACAGGATGTGGGACCATTAGAATCAAAGTCATTAACGGATGGAAATTTAATGAAAGAGAAGATGGGGCAAGAGCAAATGGTATTGTCAGAAAGTGATACCAAGAGTGTCACATCCTCAGTTCAGGGGAAACCATATAGTCCCTTACTTGAACTGCCTGTTGAAGCAAACACAATTAAAGCGAAAATTGAACCTCAAGAATTGCAGGTTTCCCTCCAGCTTCCCACTCAAACTAAAATAATTTCATCCCGGGTGCGTCCAGCTGTTCGATCTGCTTCTGCTTCCGCTTCTTATTTTAACTCCTTAAAAGGTTCACCTGTAGCTATCTCAAGATATCATAGTGCACCATCAGCTCTTGGAATAACATCTGTGTTGCAGGATCATGCAGCAGTGGATATCAAAGAAGTAACTCATGCAGTGACAGTATCTCCTCCAGCTTCTGCGATGCCTCCTTCAGACTCCAAGGTGTTAAATTCTGTAGACCCTGGTTCCACAACTGTTCCTGCAGCATCATCATCGCCTTTGCTTCCATCTTCACCATTAAAAACTTCAGCTGATGCTCTTAACACCACGAAAAAGACTTTTGGATCCCTTCCTCCTGCAGCTGTCACTACTACTCCATCACCACCACCACCACCACCGCCACCACCGCCACCACCACTTCCTCAATGTGATCACACTTCAAATTTGATGCCATCTAATGTTACACAGTACCCTGAGAATACAAACGAAGGTAAGAAACCATTGGTCAGTCCTCCTCTTCCCCCAACCCCTGCAATGCTCGTCCCTCCAATTCCATCTCTTTCTCCAGCCCCTTCCCTTCCTGAAACATCACATTCCACAACCAAAGTTTCATGTAAAGGTCCTCCTGCACCACCGCCTCCACCTGCACTCTTTGGGTTTCCTTCTTCATTGAGTATGAATGAATCAATTTCTACACCTGGCCTTCCTGCTCCTCCCCCGCCTCCACCATTAGCACCACCACCACCCCCTCCTCCAGCTTCTGCATTCCAAAATTCTTTGTCTAAGAACTCAATAAATGGTCCTCCTGTACCCCCACCTCCACCTCCTAGCCTTCCTGGTTCAACTCCATCACCATCACCACGAGCGCCACCACCACCCCCTCCTCCAGGTTCTGCATCCCAAAATTCTTTGTCTAGCTCCACAAATGTTCCACCTGTACCCCCACCTCCCCTTTCTGCCAATGGATTGTCAAAACCGGCAGTTCCTGGACCACCTTCTGCTCCTTTTGGTGCAAGGGAACGTGGCCTGACGCGAGCTAACCCAAAAGGTCAATCTAAGAGGAGCAATCTGAAACCTTACCATTGGTTAAAATTAACAAGGGCAATGCAAGGAAGCTTATGGGCTGAAACACAGAAACTAGATGAATTTTGTAGGGCTCCAGAGTTTGACATGTCAGAACTTGAAACTTTGTTCTCCGCAGCTGCTCCAGCTACTACTGATGGAAAAGGAGGAAAATTAAATCGCCGTGCCTCTGGCCTCAGAGTTGAGAAAGTTCAACTGATTGAGCTCAGGCGTGCGTATAACTGTGAGATCATGCTTACAAAAGTCAAAATCCCTTTGCCTGATTTGATGTCTGCTGTGCTTGCAATGGATGATTCAGTATTAGATGTCGATCAAATTGAGAACCTCATAAAATTCTCTCCAACCAAAGAAGAGATGGAAACACTCAAGAACTATACTGGGAATAAGGACAACTTGGGAAAGTGTGAACAGTTCTTCATAGAATTAATGAAAGTGCCAAGAGTGGAAAGCAAGCTAAGAGTTTTCTCTTTTAAGATGCAATTCTTATCCCAGGTTTCAGAGCTTAAAAGAGACTTAAATATTGTGAATTCTGCATCTGAAGAGATAAGGAATTCAGTCAAGTTGAAAAGAATCATGCAGACCATTCTTTCTCTGGGTAATGCTTTGAACCATGGAACTGCAAGAGGTTCGGCTGTTGGGTTTCGATTGGATAGTCTCCTTAAACTGACTGATACACGAGCTAGAAACAGCAAGATGACTCTTATGCACTATCTCTGTAAGGTGCTTTCCGAAAAACTAGGAGAACTTCTTGATTTCCACAAAGACCTATTGAGTTTGGAGGCTGCAAGCAAGATACAATTAAAATACTTGGCAGAGGAAATGCAAGCTATTAGTAAAGGACTGGAGAAAGTAGTTCAGGAATTGACTGCATCCGAGAATGATGGACTTGTGTCAGAAAACTTCTGCCAGATTCTGAAGGAATTTCTTTCTTATGCTGAAGCTGAAGTAAGGTCTTTGGCTCAACTTTATGCCAATGTGGGTAGAAATGCAGATGCATTGGCTTTATACTTTGGTGAAGATCCAGCACGTTGCCCATTTGAACAAGTTGTATCAACGCTGCTCAACTTTGTGAGATTGTTCATAAAAGCACATGAAGAAAATTGCAAGCAGATTGAACTAGAAAGAAAGAGAGCCGAGAAGGAAGCAGAGAATGAGAAGTTGAAGATAGCTGCTGCCAAAAAGGAGTCTGAACCGATGATAAGGACCACCATAAAGAGTGAGGACATTAAATGA 4233 0.4297 MALFRKFFYKKPPDGLLEITERVYGTLPVASFSVNSLVLVEVNSVVFDYCFTTDVMEEEEYRVYIGGIIGQLRGHFPDASFMVFNMREGDSQSQISNILCDYDMTVIDYPRQYEGCPLLTMEMIHHFLRSGENWLQLGQQNVVLMHCERGGWPLLAFMLAALLIYRKMFTGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYISRRNVGSEWPPLDRALTLDCVIIRLIPNMGGEGGCRPIFRIYGQDPFIPADRTPKVLFSTPKRSKLVRYCKQTDCELVKIDIHCHVQGDVVFECIHLHSDLEHEEMMFRVMFNTAFIRSNILMLNRDEIDILWNAKDYFPKNFRVEVLFSDMDASSSVISLDLPRIEEKEGLPVEAFAKVKEIFSNVDWLDSKEEVASVLQQITASNILLERLDTGVSAATSGFLMESSEKFTAVSKPHSDTSNLTSAVQGIHSTSSLGSSVDVAMENKTEPLESKTLSENDIETLECSGHRNQQPIHSFGLTKDSSSTERPVELFESKTSVENDAKVPTSMAHVEQSMSSTGPSKDANSMTQDVGPLESKSLTDGNLMKEKMGQEQMVLSESDTKSVTSSVQGKPYSPLLELPVEANTIKAKIEPQELQVSLQLPTQTKIISSRVRPAVRSASASASYFNSLKGSPVAISRYHSAPSALGITSVLQDHAAVDIKEVTHAVTVSPPASAMPPSDSKVLNSVDPGSTTVPAASSSPLLPSSPLKTSADALNTTKKTFGSLPPAAVTTTPSPPPPPPPPPPPPLPQCDHTSNLMPSNVTQYPENTNEGKKPLVSPPLPPTPAMLVPPIPSLSPAPSLPETSHSTTKVSCKGPPAPPPPPALFGFPSSLSMNESISTPGLPAPPPPPPLAPPPPPPPASAFQNSLSKNSINGPPVPPPPPPSLPGSTPSPSPRAPPPPPPPGSASQNSLSSSTNVPPVPPPPLSANGLSKPAVPGPPSAPFGARERGLTRANPKGQSKRSNLKPYHWLKLTRAMQGSLWAETQKLDEFCRAPEFDMSELETLFSAAAPATTDGKGGKLNRRASGLRVEKVQLIELRRAYNCEIMLTKVKIPLPDLMSAVLAMDDSVLDVDQIENLIKFSPTKEEMETLKNYTGNKDNLGKCEQFFIELMKVPRVESKLRVFSFKMQFLSQVSELKRDLNIVNSASEEIRNSVKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNSKMTLMHYLCKVLSEKLGELLDFHKDLLSLEAASKIQLKYLAEEMQAISKGLEKVVQELTASENDGLVSENFCQILKEFLSYAEAEVRSLAQLYANVGRNADALALYFGEDPARCPFEQVVSTLLNFVRLFIKAHEENCKQIELERKRAEKEAENEKLKIAAAKKESEPMIRTTIKSEDIK* 1411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00540 1410 ProSiteProfiles C2 tensin-type domain profile. 220 359 IPR014020 -
Phac1g00540 1410 MobiDBLite consensus disorder prediction 784 802 - -
Phac1g00540 1410 SMART PTEN_C2_2 218 358 IPR014020 -
Phac1g00540 1410 SMART it6_source 769 1408 IPR015425 -
Phac1g00540 1410 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1062 1386 - -
Phac1g00540 1410 PANTHER FORMIN-J 1 915 - -
Phac1g00540 1410 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 222 359 IPR035892 -
Phac1g00540 1410 ProSiteProfiles Formin homology-2 (FH2) domain profile. 986 1386 IPR015425 -
Phac1g00540 1410 MobiDBLite consensus disorder prediction 710 760 - -
Phac1g00540 1410 Coils Coil 1361 1397 - -
Phac1g00540 1410 MobiDBLite consensus disorder prediction 872 894 - -
Phac1g00540 1410 MobiDBLite consensus disorder prediction 948 972 - -
Phac1g00540 1410 Pfam Formin Homology 2 Domain 992 1360 IPR015425 -
Phac1g00540 1410 Gene3D Protein tyrosine phosphatase superfamily 16 212 IPR029021 -
Phac1g00540 1410 Gene3D - 217 362 - -
Phac1g00540 1410 MobiDBLite consensus disorder prediction 905 938 - -
Phac1g00540 1410 MobiDBLite consensus disorder prediction 530 567 - -
Phac1g00540 1410 Gene3D Formin, FH2 domain 1005 1398 IPR042201 -
Phac1g00540 1410 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 95 208 IPR029021 -
Phac1g00540 1410 MobiDBLite consensus disorder prediction 701 997 - -
Phac1g00540 1410 MobiDBLite consensus disorder prediction 807 829 - -
Phac1g00540 1410 MobiDBLite consensus disorder prediction 499 516 - -
Phac1g00540 1410 Pfam C2 domain of PTEN tumour-suppressor protein 221 357 IPR014020 -
Phac1g00540 1410 MobiDBLite consensus disorder prediction 499 570 - -
Phac1g00540 1410 MobiDBLite consensus disorder prediction 761 783 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00540 Phac-Chr1 4064859 4088399 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00540 1 423 FH2 protein (formin) Gene Family AT2G25050 67.925 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00540 - - pvu:PHAVU_001G042000g 2264.96