LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac1g00517	ATGAGGTTGCTAGAGAAGGTTACAACTTTTGTTCTTCTACTTGCTCTTCATCCTCCTTTCCTTAAAACTGTAGAATCACTAAATTTCAACATAACAAACTTCAACGACCCTGAGAGTGAAAAAACCATGGCATACGTGGGTGATGGCCAAGCCACCACCAACGGCACCATACAACTCAACATTGTGGACTATCTTTTCCGCGTTGGAAGAGCTTTGTACGCAAAACCTCTGCACCTGTGGGACGCCTCTTCGAATGTTCTCACAGACTTCACCACACGCTTCACTTTCACCATTGACAGAGCCACCAATGGCACCTATGCTGACGGTTTCGCCTTCTACATGGCCCCTCATGGCTACCAGATTCCTCCCAACGCAGCTGGTGGCACCTTTGCCCTTTTCAACACCACCTCCAATACCTTTATTCCCCATAACCACGTTCTCGCGGTTGAGTTTGACACATTTAATGGCACCATTGACCCACCCATGCAGCACGTTGGCATAGACGATAACTCGCTCAAATCCGTGGCTTTTGCCAAGTTTGACATTGACAAAAACCTGGGAAAGAAATGTAACGTTTTGATAACCTACACTGCTTCCAACAAGACCCTCTTTGTCGCTTGGTCCTTCAACGGAACGGCAAATTCACACTCCAATTCTTCACTTTCTTACAAGATTGACCTCATGGAAATTCTACCCGAGTGGGTGGATGTTGGGTTCTCTGCTTCAACAGGCGAATTAACTGAGCACAACATTATTTACTCGTGGCAGTTTAGTTCAACGTTGAATTCCGATGCTACGGATAATTCCTCCGATGAGGGGAACGGTGGGAACGGAAAACGAAACGTTTTGGTGGTTGCTGTGGCGACTTCTTCAGCGGTCTTGGTGGTCGTGGTTGCGAGTATTGCAGTTTGGGTCATGATGAGGAGGAAAAGAAGGGATACGGTTGATAAGAGTAATGATGGTGAAGGTGGAGCCAGCTTGGTTAAGTTTGACTTGGATAGGGCAACTATACCAAGAAGGTTTGATTACAAAGAACTAGTCGCAGCCACCAACGGATTCGCAGATGATAGAAAGCTTGGACGAGGAGCCTCGGGACAGGTTTACAAAGGGCTTCTGAGTGATTTAGGAAGGGTTGTTGCTGTGAAAAGGATTTTCGCCAAATTCGCAAATTCAGAGAGAGTTTTCATCAATGAGGTTAGGGTTATAAGCCGTCTTATACACAGAAACTTGGTGCAGTTCGTAGGGTGGTGCCACGAGCAAGGTGAGTTTTTGTTGCTTTTTGAGTACATGCCTAATGGAAGCCTCGACACTCATCTCTTTGGGGACAAAAAACCTTTGACCTGGGATGTTAGGTACAAGGTAGCATTAGGAGTGGCTGCAGCAGTTCGTTATCTTCATGAAGATGCGGAGCAGTGTGTTCTTCACAGGGATATTAAGTCAGCAAATGTGTTGTTGGACACAGATTTTAGCACAAAGCTTGGAGATTTTGGAATGGCAAAGTTTGTGGATCCAAGGTTGAGGACTCAAATGACAGGGGTGGTGGGGACTTTCGGGTACCTTGCCCCAGAATACCTCAACGGAGGTAGGACTAGTAAGGAATCAGACATGTATAGTTTTGGTGTTGTGGCTCTTGAAATTGCATGTGGAAGGAGGACTTATCTGGATGGGGAGTTTCATATGCCTCTCATGAACTGGGTGTGGAAAAAATATGTGGAAGGGAATGTGATGGACGTTGTTGATGAGAAATTGAACAAGGAATTTGATGTGGATGAAATGAGAAGCCTGATCATTGTGGGGTTGTGGTGTACTAACCCTAACGACAAGGAAAGGCCAAAGGCAGCACAAGTGATAAAGGTTCTTGAGCTAGAAGCTCCATTGCCAGAGCTTCCACTTGATATGCACGACCATCTTCCTCCTTCTCTAGTTACATATTCACAAGAACCTAATTATCAGTCCGTGCAGACACTACCTTTCACTGACAGCTTTATATCTGTTGGACGTTAG	2004	0.4566	MRLLEKVTTFVLLLALHPPFLKTVESLNFNITNFNDPESEKTMAYVGDGQATTNGTIQLNIVDYLFRVGRALYAKPLHLWDASSNVLTDFTTRFTFTIDRATNGTYADGFAFYMAPHGYQIPPNAAGGTFALFNTTSNTFIPHNHVLAVEFDTFNGTIDPPMQHVGIDDNSLKSVAFAKFDIDKNLGKKCNVLITYTASNKTLFVAWSFNGTANSHSNSSLSYKIDLMEILPEWVDVGFSASTGELTEHNIIYSWQFSSTLNSDATDNSSDEGNGGNGKRNVLVVAVATSSAVLVVVVASIAVWVMMRRKRRDTVDKSNDGEGGASLVKFDLDRATIPRRFDYKELVAATNGFADDRKLGRGASGQVYKGLLSDLGRVVAVKRIFAKFANSERVFINEVRVISRLIHRNLVQFVGWCHEQGEFLLLFEYMPNGSLDTHLFGDKKPLTWDVRYKVALGVAAAVRYLHEDAEQCVLHRDIKSANVLLDTDFSTKLGDFGMAKFVDPRLRTQMTGVVGTFGYLAPEYLNGGRTSKESDMYSFGVVALEIACGRRTYLDGEFHMPLMNWVWKKYVEGNVMDVVDEKLNKEFDVDEMRSLIIVGLWCTNPNDKERPKAAQVIKVLELEAPLPELPLDMHDHLPPSLVTYSQEPNYQSVQTLPFTDSFISVGR*	668

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac1g00517	667	SUPERFAMILY	Protein kinase-like (PK-like)	337	646	IPR011009	-
	Phac1g00517	667	PANTHER	-	52	625	-	-
	Phac1g00517	667	CDD	lectin_legume_LecRK_Arcelin_ConA	27	261	IPR001220	GO:0030246
	Phac1g00517	667	ProSitePatterns	Legume lectins alpha-chain signature.	231	240	IPR000985	-
	Phac1g00517	667	FunFam	L-type lectin-domain containing receptor kinase IX.1	25	275	-	-
	Phac1g00517	667	Pfam	Legume lectin domain	26	269	IPR001220	GO:0030246
	Phac1g00517	667	FunFam	L-type lectin-domain containing receptor kinase IX.1	430	630	-	-
	Phac1g00517	667	SUPERFAMILY	Concanavalin A-like lectins/glucanases	26	261	IPR013320	-
	Phac1g00517	667	SMART	serkin_6	353	626	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac1g00517	667	Gene3D	-	24	273	-	-
	Phac1g00517	667	ProSiteProfiles	Protein kinase domain profile.	353	637	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac1g00517	667	Gene3D	Transferase(Phosphotransferase) domain 1	430	635	-	-
	Phac1g00517	667	Gene3D	Phosphorylase Kinase; domain 1	325	429	-	-
	Phac1g00517	667	Pfam	Protein kinase domain	354	617	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac1g00517	667	ProSitePatterns	Protein kinases ATP-binding region signature.	359	382	IPR017441	GO:0005524
	Phac1g00517	667	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	473	485	IPR008271	GO:0004672\|GO:0006468
	Phac1g00517	667	FunFam	L-type lectin-domain containing receptor kinase IX.1	338	429	-	-
	Phac1g00517	667	ProSitePatterns	Legume lectins beta-chain signature.	147	153	IPR019825	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac1g00517	Phac-Chr1	3857265	3859887	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac1g00517	9	633	Receptor kinase-like Gene Family	AT5G10530	43.956	4.01e-178	520

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Phac1g00517		Pkinase	2e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac1g00517	-		-	vra:106763732	1123.23