Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00508 ATGGGGTGGGGTCACCTCGGAAGGCATGGCTCAGATTCAGGCGTCGACACGGAAGCTGGTCCGAGCACCGCCGCCACTGAGCCACGGCGGTTTCCACTGGCGGCTCAGCCAGAAATGATGCGCGCCGCCGAGAAGGATGATCAATACGCTTCTTTCGTCTACGAAGCCTGTCGTGACGCCTTTCGCCACCTCTTTGGTACCAGAGTTGCGGTGGCTTACCAAAACGAGACGAAGCTCTTAGGGCAGATGCTTTACTACGTTCTGACAACTGGCTCTGGACAACAAACCCTTGGAGAGGAATACTGCGATATCACTCAGGTTGCAGGAACTTATGGACTTCCTCCTACGCCTGCGAGGCGTGCCCTTTTCATTGTATATCAGTCGGCTATTCCATATATGGCAGAACGGATTAGCTCTAGAATTGCTTCACGAGGCATTGTCCTTGCTGACTCAGAGTCTGCCGAGGGTTTCGGAGAAAATGCCCACAGGAGCCCTGGTTCTCAGATTTCTGACACTGGTCCTTTATCCTCGTCGGGACAATCTGTTACAACTCTGTCAAGGTTGAAGGGGAAACTGAGTGCATTTTGGTTGCATTTGGTTCAGAGATGGCCCACGATGCTCCCTTTTGTTCGTGAGTTGTTGCAGTTGGCTCTTCGTGCTAACCTTATGTTATTCTACTTTGAAGGCCTTTATTATCATATATCCAAACGTGCTGCTGGCATCCGTTATGTATTTATCGGAAAAGCATCAAACCAAAGACCTAGATACCAAATACTAGGAGTATTTCTGTTGATTCAACTTTGTATAATAGCTGCTGAAGGTCTCCGCCGAAGAAATTTTACTTCAATTGCTGCTTCAGTTAATCAAGCATCCTTTGCATCCCACGATAGATCAGCAGGACATGGTTTACCCGTTTTAAATGAAGAGGGTACTCTGGCAACTCCTGATATTGACAGAGGAAGTTGGGTCTCTGATTCTTCATCTTCTGAGCATCATGCAGCTAGTGGGGTTAGCAAGTGCACACTTTGCCTTAGTAATCGTCAATACCCAACAGCTACTTCCTGTGGCCATGTATTCTGCTGGAACTGTATCACAGAATGGTGCAACGAAAAGCCAGAGTGCCCTCTTTGCCGCACCCCCATAACACACTCGAGTCTAGTTTGTGTATATCATTCAGACTTCTAG 1185 0.4819 MGWGHLGRHGSDSGVDTEAGPSTAATEPRRFPLAAQPEMMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGTYGLPPTPARRALFIVYQSAIPYMAERISSRIASRGIVLADSESAEGFGENAHRSPGSQISDTGPLSSSGQSVTTLSRLKGKLSAFWLHLVQRWPTMLPFVRELLQLALRANLMLFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYQILGVFLLIQLCIIAAEGLRRRNFTSIAASVNQASFASHDRSAGHGLPVLNEEGTLATPDIDRGSWVSDSSSSEHHAASGVSKCTLCLSNRQYPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCVYHSDF* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00508 394 FunFam Peroxisome biogenesis factor 10 315 391 - -
Phac1g00508 394 SUPERFAMILY RING/U-box 339 383 - -
Phac1g00508 394 Pfam Pex2 / Pex12 amino terminal region 46 277 IPR006845 -
Phac1g00508 394 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 32 392 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Phac1g00508 394 SMART ring_2 340 377 IPR001841 -
Phac1g00508 394 MobiDBLite consensus disorder prediction 163 178 - -
Phac1g00508 394 ProSiteProfiles Zinc finger RING-type profile. 340 378 IPR001841 -
Phac1g00508 394 MobiDBLite consensus disorder prediction 157 178 - -
Phac1g00508 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 391 IPR013083 -
Phac1g00508 394 MobiDBLite consensus disorder prediction 1 33 - -
Phac1g00508 394 Pfam Zinc finger, C3HC4 type (RING finger) 339 383 - -
Phac1g00508 394 CDD RING-HC_PEX10 338 389 - -
Phac1g00508 394 ProSitePatterns Zinc finger RING-type signature. 355 364 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00508 Phac-Chr1 3714771 3719665 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00508 324 390 C3H Transcription Factor Family AT4G28270 28.916 1.43e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00508 K13346 - gmx:100783914 726.857