Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Phac1g00508 | ATGGGGTGGGGTCACCTCGGAAGGCATGGCTCAGATTCAGGCGTCGACACGGAAGCTGGTCCGAGCACCGCCGCCACTGAGCCACGGCGGTTTCCACTGGCGGCTCAGCCAGAAATGATGCGCGCCGCCGAGAAGGATGATCAATACGCTTCTTTCGTCTACGAAGCCTGTCGTGACGCCTTTCGCCACCTCTTTGGTACCAGAGTTGCGGTGGCTTACCAAAACGAGACGAAGCTCTTAGGGCAGATGCTTTACTACGTTCTGACAACTGGCTCTGGACAACAAACCCTTGGAGAGGAATACTGCGATATCACTCAGGTTGCAGGAACTTATGGACTTCCTCCTACGCCTGCGAGGCGTGCCCTTTTCATTGTATATCAGTCGGCTATTCCATATATGGCAGAACGGATTAGCTCTAGAATTGCTTCACGAGGCATTGTCCTTGCTGACTCAGAGTCTGCCGAGGGTTTCGGAGAAAATGCCCACAGGAGCCCTGGTTCTCAGATTTCTGACACTGGTCCTTTATCCTCGTCGGGACAATCTGTTACAACTCTGTCAAGGTTGAAGGGGAAACTGAGTGCATTTTGGTTGCATTTGGTTCAGAGATGGCCCACGATGCTCCCTTTTGTTCGTGAGTTGTTGCAGTTGGCTCTTCGTGCTAACCTTATGTTATTCTACTTTGAAGGCCTTTATTATCATATATCCAAACGTGCTGCTGGCATCCGTTATGTATTTATCGGAAAAGCATCAAACCAAAGACCTAGATACCAAATACTAGGAGTATTTCTGTTGATTCAACTTTGTATAATAGCTGCTGAAGGTCTCCGCCGAAGAAATTTTACTTCAATTGCTGCTTCAGTTAATCAAGCATCCTTTGCATCCCACGATAGATCAGCAGGACATGGTTTACCCGTTTTAAATGAAGAGGGTACTCTGGCAACTCCTGATATTGACAGAGGAAGTTGGGTCTCTGATTCTTCATCTTCTGAGCATCATGCAGCTAGTGGGGTTAGCAAGTGCACACTTTGCCTTAGTAATCGTCAATACCCAACAGCTACTTCCTGTGGCCATGTATTCTGCTGGAACTGTATCACAGAATGGTGCAACGAAAAGCCAGAGTGCCCTCTTTGCCGCACCCCCATAACACACTCGAGTCTAGTTTGTGTATATCATTCAGACTTCTAG | 1185 | 0.4819 | MGWGHLGRHGSDSGVDTEAGPSTAATEPRRFPLAAQPEMMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGTYGLPPTPARRALFIVYQSAIPYMAERISSRIASRGIVLADSESAEGFGENAHRSPGSQISDTGPLSSSGQSVTTLSRLKGKLSAFWLHLVQRWPTMLPFVRELLQLALRANLMLFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYQILGVFLLIQLCIIAAEGLRRRNFTSIAASVNQASFASHDRSAGHGLPVLNEEGTLATPDIDRGSWVSDSSSSEHHAASGVSKCTLCLSNRQYPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCVYHSDF* | 395 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Phac1g00508 | 394 | FunFam | Peroxisome biogenesis factor 10 | 315 | 391 | - | - | |
Phac1g00508 | 394 | SUPERFAMILY | RING/U-box | 339 | 383 | - | - | |
Phac1g00508 | 394 | Pfam | Pex2 / Pex12 amino terminal region | 46 | 277 | IPR006845 | - | |
Phac1g00508 | 394 | PANTHER | PEROXISOME ASSEMBLY PROTEIN 10 | 32 | 392 | IPR025654 | GO:0005778|GO:0007031|GO:0008270|GO:0016558 | |
Phac1g00508 | 394 | SMART | ring_2 | 340 | 377 | IPR001841 | - | |
Phac1g00508 | 394 | MobiDBLite | consensus disorder prediction | 163 | 178 | - | - | |
Phac1g00508 | 394 | ProSiteProfiles | Zinc finger RING-type profile. | 340 | 378 | IPR001841 | - | |
Phac1g00508 | 394 | MobiDBLite | consensus disorder prediction | 157 | 178 | - | - | |
Phac1g00508 | 394 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 318 | 391 | IPR013083 | - | |
Phac1g00508 | 394 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Phac1g00508 | 394 | Pfam | Zinc finger, C3HC4 type (RING finger) | 339 | 383 | - | - | |
Phac1g00508 | 394 | CDD | RING-HC_PEX10 | 338 | 389 | - | - | |
Phac1g00508 | 394 | ProSitePatterns | Zinc finger RING-type signature. | 355 | 364 | IPR017907 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Phac1g00508 | Phac-Chr1 | 3714771 | 3719665 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Phac1g00508 | 324 | 390 | C3H Transcription Factor Family | AT4G28270 | 28.916 | 1.43e-09 | 55.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Phac1g00508 | K13346 | - | gmx:100783914 | 726.857 |