Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00507 ATGCTTTACTACGTTCTGACAACTGGCTCTGGACAACAAACCCTTGGAGAGGAATACTGCGATATCACTCAGGTTGCAGGAACTTATGGACTTCCTCCTACGCCTGCGAGGCGTGCCCTTTTCATTGTATATCAGTCGGCTATTCCATATATGGCAGAACGGATTAGCTCTAGAATTGCTTCACGAGGCATTGTCCTTGCTGACTCAGAGTCTGCCGAGGGTTTCGGAGAAAATGCCCACAGGAGCCCTGGTTCTCAGATTTCTGACACTGGTCCTTTATCCTCGTCGGGACAATCTGTTACAACTCTGTCAAGGTTGAAGGGGAAACTGAGTGCATTTTGGTTGCATTTGGTTCAGAGATGGCCCACGATGCTCCCTTTTGTTCGTGAGTTGTTGCAGTTGGCTCTTCGTGCTAACCTTATGTTATTCTACTTTGAAGGCCTTTATTATCATATATCCAAACGTGCTGCTGGCATCCGTTATGTATTTATCGGAAAAGCATCAAACCAAAGACCTAGATACCAAATACTAGGAGTATTTCTGTTGATTCAACTTTGTATAATAGCTGCTGAAGGTCTCCGCCGAAGAAATTTTACTTCAATTGCTGCTTCAGTTAATCAAGCATCCTTTGCATCCCACGATAGATCAGCAGGACATGGTTTACCCGTTTTAAATGAAGAGGGTACTCTGGCAACTCCTGATATTGACAGAGGAAGTTGGGTCTCTGATTCTTCATCTTCTGAGCATCATGCAGCTAGTGGGGTTAGCAAGTGCACACTTTGCCTTAGTAATCGTCAATACCCAACAGCTACTTCCTGTGGCCATGTATTCTGCTGGAACTGTATCACAGAATGGTGCAACGAAAAGCCAGAGTGCCCTCTTTGCCGCACCCCCATAACACACTCGAGTCTAGTTTGTGTATATCATTCAGACTTCTAG 939 0.4515 MLYYVLTTGSGQQTLGEEYCDITQVAGTYGLPPTPARRALFIVYQSAIPYMAERISSRIASRGIVLADSESAEGFGENAHRSPGSQISDTGPLSSSGQSVTTLSRLKGKLSAFWLHLVQRWPTMLPFVRELLQLALRANLMLFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYQILGVFLLIQLCIIAAEGLRRRNFTSIAASVNQASFASHDRSAGHGLPVLNEEGTLATPDIDRGSWVSDSSSSEHHAASGVSKCTLCLSNRQYPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCVYHSDF* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00507 312 ProSitePatterns Zinc finger RING-type signature. 273 282 IPR017907 -
Phac1g00507 312 ProSiteProfiles Zinc finger RING-type profile. 258 296 IPR001841 -
Phac1g00507 312 CDD RING-HC_PEX10 256 307 - -
Phac1g00507 312 SMART ring_2 258 295 IPR001841 -
Phac1g00507 312 SUPERFAMILY RING/U-box 257 301 - -
Phac1g00507 312 FunFam Peroxisome biogenesis factor 10 233 309 - -
Phac1g00507 312 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 1 310 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Phac1g00507 312 MobiDBLite consensus disorder prediction 75 98 - -
Phac1g00507 312 MobiDBLite consensus disorder prediction 81 98 - -
Phac1g00507 312 Pfam Pex2 / Pex12 amino terminal region 1 195 IPR006845 -
Phac1g00507 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 309 IPR013083 -
Phac1g00507 312 Pfam Zinc finger, C3HC4 type (RING finger) 257 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00507 Phac-Chr1 3714771 3719665 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00507 242 308 C3H Transcription Factor Family AT4G28270 28.916 1.04e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00507 K13346 - gmx:100783914 573.548