LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac1g00480	ATGGAAGGAACTAGAGTGAAGGAGGAAGAAACAGTGACATGTGGTGGTGGTGGTTCATCATCATCATCTTCGACTTTGAGCTTTTCTCCACAACCTATGGAAGGGTTGAACGAGGTGGGTACCCCACCATTTTTGACAAAGATCTATGACATGGTGGAAGATCCTTCCACAGACTCTATTGTATCATGGAGCACTTCTTGCAATAGCTTTGTTGTGTGGGATTCTCACAACTTTTCTACTAACATTCTTCCTCGTTACTTCAAGCACAACAATTTCTCCAGCTTCATTCGCCAGCTCAACACCTATGGGTTTAGGAAAGTTGATCCTGATAGATGGGAGTTTGCAAATGAAGGATTTTTGGCAGGACAAAGACACTTATTGAAGTCCATAAAGAGAAAAAGAAAAGTGTCACTGAGCATGCAAGAAAGAGGAGGTGGAGCATGTGTTGAAGTGGGGGAGTTTGGACTAGAAGGTGAGTTGGAGAGGTTGAAAAGAGACAGGAACATTTTGATGGCAGAAGTTGTGAGGTTGAGGCATCAACAGCTGAACTCAAGAGACCAATTGAGTGCCATGGAGACCAGATTGCAAGCAACAGAGAAGAAACAACAAAAGATGATGATATTCCTTGCCAAAGCACTAAAAAATCCATCTTTCATGCAACAATTAGTCCACAAGACCCCCCAAAGTAGAGAAATGTTGGATGTTGAAATCAATAGGAAAAGGAGACTAATTGCTAGCCAGAGTTTGGAGAACTTGCAACAAGATGATCCTGTAACATCGGTGGACTATCCAAGCCTTGATCAAGATTTGGCAACTATGAAGCCTGAGATGGACACTTTTTTCTCACCAGCTTTTGATAGTGAACATGGTAATGAAATCAAAGAGCATGCATTGGATTCAGATATAGCAGCTAGTCAGAGTTATTTTGGAGACACAATGATGGAGGACTTTTTCATCAAAGACTTGGTTAATGAGGATCCAAAGGATGAAGTTATCATTGGTGATTGTTCCCAAATTGATGTGCCACTGGAGGATTTGGTAGCAAACTCTGATGATTGGATGGAGCAATTTCAGGACCATGTAGATCATATGGACTATTCAGGATCCAAACCATAG	1116	0.4158	MEGTRVKEEETVTCGGGGSSSSSSTLSFSPQPMEGLNEVGTPPFLTKIYDMVEDPSTDSIVSWSTSCNSFVVWDSHNFSTNILPRYFKHNNFSSFIRQLNTYGFRKVDPDRWEFANEGFLAGQRHLLKSIKRKRKVSLSMQERGGGACVEVGEFGLEGELERLKRDRNILMAEVVRLRHQQLNSRDQLSAMETRLQATEKKQQKMMIFLAKALKNPSFMQQLVHKTPQSREMLDVEINRKRRLIASQSLENLQQDDPVTSVDYPSLDQDLATMKPEMDTFFSPAFDSEHGNEIKEHALDSDIAASQSYFGDTMMEDFFIKDLVNEDPKDEVIIGDCSQIDVPLEDLVANSDDWMEQFQDHVDHMDYSGSKP*	372

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac1g00480	371	SMART	hsfneu3	40	133	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac1g00480	371	Coils	Coil	160	180	-	-
	Phac1g00480	371	ProSitePatterns	HSF-type DNA-binding domain signature.	83	107	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac1g00480	371	MobiDBLite	consensus disorder prediction	14	32	-	-
	Phac1g00480	371	SUPERFAMILY	"Winged helix" DNA-binding domain	41	133	IPR036390	-
	Phac1g00480	371	MobiDBLite	consensus disorder prediction	1	32	-	-
	Phac1g00480	371	PRINTS	Heat shock factor (HSF) domain signature	44	67	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac1g00480	371	PRINTS	Heat shock factor (HSF) domain signature	82	94	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac1g00480	371	PRINTS	Heat shock factor (HSF) domain signature	95	107	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac1g00480	371	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	30	254	IPR027725	-
	Phac1g00480	371	FunFam	Heat shock transcription factor 1	37	134	-	-
	Phac1g00480	371	Pfam	HSF-type DNA-binding	44	133	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac1g00480	371	Gene3D	-	37	134	IPR036388	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac1g00480	Phac-Chr1	3415084	3417895	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac1g00480	30	371	HSF	AT2G26150	50.575	2.43e-117	342

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Phac1g00480		HSF_DNA-bind	1.1e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac1g00480	K09419		-	gmx:100778558	518.464