Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00428 ATGGGAAGAGCTCCTTGTTGTGACAAAGCCAATGTCAAAAGAGGACCATGGTCCCCTGAAGAAGATGCAGCACTCAAAGCCTATGTGGAGTCTCATGGAACTGGTGGAAATTGGATTGCATTGCCCAAAAAAGCTGGCCTTAGACGGTGTGGGAAGAGTTGCCGTCTACGGTGGCTGAATTATCTGAGACCAGACATCAAACATGGAGGCTTCACTGAAGAAGAAGACAACATCATTTGCAATCTCTATGGCCAGATGGGAAGCAGATGGTCTGCCATAGCCTCTAAGCTTCATGGCAGAACCGACAATGATGTGAAAAATTACTGGAACACCAAACTGAAGAAGAAGATGATAGCAGGAAAAGTTTGTCTCAAAACATTTACTGAAAATGGAATTCTTCCTCCAACTTCAACCCCATTACCAACCAACCAAAGTCTCAATATTCAAAATTCACCTTTCAATGCTTCACCAAATCAAACTTTGGTGCCACCAATCTTGGAAGCTAATGATAACAATGCATTCACCATTAATCAAAACAGCATCATTAGTTTTGATCAAACGAACCATCATGGGTTGCATGGTGTCTCACGAACTGGTGCAGCAAGTTCAAGGATCAACAATGACATCAATGATAATAACAGCAATAGTCACATGGTGTCACTGTCTCAAGAAGGTTCAAGCAGCATTTCGGATTCATCTTCAATTGCAATGAATTACAACAAGTGTGTCGTGTCACAGCCTCAACAACAACAGCAACAACAAAGTGATGAATCCATGGACATGTTCATGGATTTTGGCTTTGGATTTCCCTATGATTTTGCCAATGGTGCTAACTGCCATTATGAGAGAGTTGGTGAAATTTTTGCTCCAGAATGGGTTGATTTTAGCTATGCTGACATTAAGCCACATTGA 912 0.4167 MGRAPCCDKANVKRGPWSPEEDAALKAYVESHGTGGNWIALPKKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIICNLYGQMGSRWSAIASKLHGRTDNDVKNYWNTKLKKKMIAGKVCLKTFTENGILPPTSTPLPTNQSLNIQNSPFNASPNQTLVPPILEANDNNAFTINQNSIISFDQTNHHGLHGVSRTGAASSRINNDINDNNSNSHMVSLSQEGSSSISDSSSIAMNYNKCVVSQPQQQQQQQSDESMDMFMDFGFGFPYDFANGANCHYERVGEIFAPEWVDFSYADIKPH* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00428 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Phac1g00428 303 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Phac1g00428 303 CDD SANT 71 113 IPR001005 -
Phac1g00428 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Phac1g00428 303 PANTHER OS09G0431300 PROTEIN 1 260 - -
Phac1g00428 303 CDD SANT 16 62 IPR001005 -
Phac1g00428 303 Gene3D - 7 68 - -
Phac1g00428 303 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Phac1g00428 303 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Phac1g00428 303 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Phac1g00428 303 FunFam Transcription factor RAX3 7 68 - -
Phac1g00428 303 Gene3D - 70 117 - -
Phac1g00428 303 SMART sant 67 115 IPR001005 -
Phac1g00428 303 SMART sant 13 64 IPR001005 -
Phac1g00428 303 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00428 Phac-Chr1 3005156 3008081 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00428 1 118 MYB Transcription Factor Family AT5G65790 82.203 3.20e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phac1g00428 Myb_DNA-binding 2.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00428 K09422 - gmx:100789985 394.815