Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00421 ATGGAGGAATACACTAATAACAATCACTTGAGTGAAAACACAGGTCCAAGTCCAAGTCCAAGGCCTAATTTTCTGTACTCTTCACCTAGTGGTGGAAACCATAATCATAACCATAACCATCATCAGCATCAGCATCATAGCCATCACCACCAGCATCATCAGTTTCCAATCAACACCTTCCATCTTCAATCGGGTGGAGCAGATCATTGCTTTCAGTCTGATCAAGTGGCACCACACCCTTCTGTGAAAACCGAAGCCAGCTCTTCTCAGCTTCACGCTCCTATTTTCCACTACCCTTTAATGAGAGGAAACCTCCACAACACCACCACCACCACCACTATGCATCACCATCCCCACCAACAAGGAGGAAGTCCAACCAGCTCCACTACCGAAGTTGAAGCCATAAAAGCTAAAATCATTGCTCACCCTCAGTACTCCAATCTTTTGGAAGCTTATATGGATTGCCAAAAGATAGGAGCTTCACCCGAAGTGGTGGCGCGTATGGTTGCGGCAAAGCAAGAGTTTGAGGCGCGGCAAAGATCCTCAGGTGGTTCAAGGGATTCTTCAAAAGACCCTGAACTTGATCAATTCATGGAAGCATACTATGACATGCTTGTGAAGTATAGAGAAGAATTAACAAGGCCTATTCAAGAGGCCATGGATTTCATGCGAAGGATAGAAACTCAACTAAATATGCTATGCAATGGACCCGTCAGGATCTTCTCTGCAGAAGATAAATGCGAAGGGGTTGGTTCATCAGAAGATGATCAAGACAACAGTGGAGGAGAAACAGAACTTCCAGAGATTGATCCACGAGCAGAAGATCGTGAACTTAAAAACCACTTGCTGAGAAAGTACAGTGGTTACTTGAGTAGCCTTAAGCAAGAACTTTCTAAGAAGAAAAAGAAAGGGAAACTCCCCAAAGATGCTAGGCAAAAGCTACTTAACTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCATTGGCTGAATCAACTGGTTTGGACCAAAAGCAAATAAATAACTGGTTCATAAACCAAAGGAAGAGGCACTGGAAACCCTCTGAAGACATGCAATTTATGGTGATGGATGGTCTGCATCCCCAAAGTGCAACTCTCTACATGGATGGTCACTACATGGCTGATGGTCACTACCGTCTAGGGCCATGA 1188 0.4444 MEEYTNNNHLSENTGPSPSPRPNFLYSSPSGGNHNHNHNHHQHQHHSHHHQHHQFPINTFHLQSGGADHCFQSDQVAPHPSVKTEASSSQLHAPIFHYPLMRGNLHNTTTTTTMHHHPHQQGGSPTSSTTEVEAIKAKIIAHPQYSNLLEAYMDCQKIGASPEVVARMVAAKQEFEARQRSSGGSRDSSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRIFSAEDKCEGVGSSEDDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSATLYMDGHYMADGHYRLGP* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00421 395 SMART HOX_1 299 364 IPR001356 GO:0003677
Phac1g00421 395 MobiDBLite consensus disorder prediction 36 54 - -
Phac1g00421 395 ProSitePatterns 'Homeobox' domain signature. 335 358 IPR017970 GO:0000981|GO:0006355
Phac1g00421 395 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 35 367 - -
Phac1g00421 395 Pfam KNOX2 domain 189 234 IPR005541 GO:0003677|GO:0005634
Phac1g00421 395 MobiDBLite consensus disorder prediction 1 54 - -
Phac1g00421 395 MobiDBLite consensus disorder prediction 247 274 - -
Phac1g00421 395 SUPERFAMILY Homeodomain-like 298 373 IPR009057 -
Phac1g00421 395 Gene3D - 302 364 - -
Phac1g00421 395 ProSiteProfiles ELK domain profile. 277 297 IPR005539 GO:0003677
Phac1g00421 395 ProSiteProfiles 'Homeobox' domain profile. 297 360 IPR001356 GO:0003677
Phac1g00421 395 FunFam Homeobox protein knotted-1-like 2 302 364 - -
Phac1g00421 395 Pfam Homeobox KN domain 317 356 IPR008422 GO:0003677|GO:0006355
Phac1g00421 395 CDD homeodomain 309 361 IPR001356 GO:0003677
Phac1g00421 395 Pfam KNOX1 domain 134 176 IPR005540 GO:0003677|GO:0005634
Phac1g00421 395 SMART ELK_2 277 298 IPR005539 GO:0003677
Phac1g00421 395 SMART KNOX2_2 184 235 IPR005541 GO:0003677|GO:0005634
Phac1g00421 395 Pfam ELK domain 277 298 IPR005539 GO:0003677
Phac1g00421 395 SMART KNOX1_2 133 177 IPR005540 GO:0003677|GO:0005634
Phac1g00421 395 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00421 Phac-Chr1 2929174 2935957 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00421 67 395 Homeobox Transcription Factor Family AT4G08150 69.733 1.39e-155 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Phac1g00421 KNOX2 3.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00421 - - vum:124822256 707.597