Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00420 ATGGAGGAATACACTAATAACAATCACTTGAGTGAAAACACAGGTCCAAGTCCAAGTCCAAGGCCTAATTTTCTGTACTCTTCACCTAGTGGTGGAAACCATAATCATAACCATAACCATCATCAGCATCAGCATCATAGCCATCACCACCAGCATCATCAGTTTCCAATCAACACCTTCCATCTTCAATCGGGTGGAGCAGATCATTGCTTTCAGTCTGATCAAGTGGCACCACACCCTTCTGTGAAAACCGAAGCCAGCTCTTCTCAGCTTCACGCTCCTATTTTCCACTACCCTTTAATGAGAGGAAACCTCCACAACACCACCACCACCACCACTATGCATCACCATCCCCACCAACAAGGAGGAAGTCCAACCAGCTCCACTACCGAAGTTGAAGCCATAAAAGCTAAAATCATTGCTCACCCTCAGTACTCCAATCTTTTGGAAGCTTATATGGATTGCCAAAAGATAGGAGCTTCACCCGAAGTGGTGGCGCGTATGGTTGCGGCAAAGCAAGAGTTTGAGGCGCGGCAAAGATCCTCAGGTGGTTCAAGGGATTCTTCAAAAGACCCTGAACTTGATCAATTCATGGAAGCATACTATGACATGCTTGTGAAGTATAGAGAAGAATTAACAAGGCCTATTCAAGAGGCCATGGATTTCATGCGAAGGATAGAAACTCAACTAAATATGCTATGCAATGGACCCGTCAGGATCTTCTCTGAAGATAAATGCGAAGGGGTTGGTTCATCAGAAGATGATCAAGACAACAGTGGAGGAGAAACAGAACTTCCAGAGATTGATCCACGAGCAGAAGATCGTGAACTTAAAAACCACTTGCTGAGAAAGTACAGTGGTTACTTGAGTAGCCTTAAGCAAGAACTTTCTAAGAAGAAAAAGAAAGGGAAACTCCCCAAAGATGCTAGGCAAAAGCTACTTAACTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCATTGGCTGAATCAACTGGTTTGGACCAAAAGCAAATAAATAACTGGTTCATAAACCAAAGGAAGAGGCACTGGAAACCCTCTGAAGACATGCAATTTATGGTGATGGATGGTCTGCATCCCCAAAGTGCAACTCTCTACATGGATGGTCACTACATGGCTGATGGTCACTACCGTCTAGGGCCATGA 1185 0.4439 MEEYTNNNHLSENTGPSPSPRPNFLYSSPSGGNHNHNHNHHQHQHHSHHHQHHQFPINTFHLQSGGADHCFQSDQVAPHPSVKTEASSSQLHAPIFHYPLMRGNLHNTTTTTTMHHHPHQQGGSPTSSTTEVEAIKAKIIAHPQYSNLLEAYMDCQKIGASPEVVARMVAAKQEFEARQRSSGGSRDSSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRIFSEDKCEGVGSSEDDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSATLYMDGHYMADGHYRLGP* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00420 394 MobiDBLite consensus disorder prediction 36 54 - -
Phac1g00420 394 ProSiteProfiles 'Homeobox' domain profile. 296 359 IPR001356 GO:0003677
Phac1g00420 394 Pfam KNOX2 domain 189 234 IPR005541 GO:0003677|GO:0005634
Phac1g00420 394 MobiDBLite consensus disorder prediction 1 54 - -
Phac1g00420 394 Gene3D - 301 363 - -
Phac1g00420 394 SMART HOX_1 298 363 IPR001356 GO:0003677
Phac1g00420 394 MobiDBLite consensus disorder prediction 245 273 - -
Phac1g00420 394 CDD homeodomain 308 360 IPR001356 GO:0003677
Phac1g00420 394 SUPERFAMILY Homeodomain-like 297 372 IPR009057 -
Phac1g00420 394 ProSiteProfiles ELK domain profile. 276 296 IPR005539 GO:0003677
Phac1g00420 394 Pfam KNOX1 domain 134 176 IPR005540 GO:0003677|GO:0005634
Phac1g00420 394 SMART KNOX2_2 184 235 IPR005541 GO:0003677|GO:0005634
Phac1g00420 394 Pfam ELK domain 276 297 IPR005539 GO:0003677
Phac1g00420 394 Pfam Homeobox KN domain 316 355 IPR008422 GO:0003677|GO:0006355
Phac1g00420 394 ProSitePatterns 'Homeobox' domain signature. 334 357 IPR017970 GO:0000981|GO:0006355
Phac1g00420 394 SMART ELK_2 276 297 IPR005539 GO:0003677
Phac1g00420 394 SMART KNOX1_2 133 177 IPR005540 GO:0003677|GO:0005634
Phac1g00420 394 FunFam Homeobox protein knotted-1-like 2 301 363 - -
Phac1g00420 394 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 35 366 - -
Phac1g00420 394 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00420 Phac-Chr1 2929174 2935957 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00420 67 394 Homeobox Transcription Factor Family AT4G08150 69.436 4.59e-155 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Phac1g00420 KNOX2 3.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00420 - - vum:124822256 712.22