Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00406 ATGGGGGGTCAGGAAAATGCCATGGGGTTTCAACACGGAAATGAGAACATTCTGACTTGTCCATCTTCAGCTCTCAGTGGTGCCAATGTTAATGTTTCAGAAATGGCTATTAGTTCTGTGTCTATGGCCAAGGCTTCAGATGTAGCTAACCCTTTTCTTGCTTCTTCCGCTTGGGATCCACTTGTTTCCTTGAGTCAGGCTCAAACTTTTGGAGGCTCCTCAATGGTTTCTCATACCGACTTTGCCAATGCCAACTCTTCTTACCCTCTTGTTCTGGAAAACCAAGGAATAAGCAACACTTCCCACCTTGTTCAGTACATGTCTGACTCAAATCTCGTGGGCATGGTCCCCAAGGTTCACTCCTATGCAAGTAGGGGCTTCTCAGAAATGGTTGGTGCTGCCTCTTTTGGCCAACATGGGTCTGGTGATGTGGCTAACACAGGGTATCCACCACATTATAATCCGATCAAGGAGGCTCAGATTAATGGTGAACAATCTCAGGTTGAGGACTCAATTCCTGAAGAGGAAGCACCAGGATCTGCTCCTAGTGGGAATAGAAGAAAGAGAGGGCTTGATCATAATTCTACCTTCAGCCCAAATAAGAATGCTGAGAGTGAAACTGTGAAAGATTCTCCGGGGAGGGCCTGTGATGGTCCAAAAGAACATGAAAAGAAGCCAAAAGTTGAGCAGAACAATAGTGCAGATTTGCGTGGCAAGCAATCAGCGAAGCAAGCTAAAGACAACAGTTCTCAAAGTGGAGAAGCTCCTAAAGAAAACTTCATTCACGTGAGAGCTAGAAGAGGACAGGCCACAAATAGCCACAGTCTAGCAGAAAGAGTGAGGAGAGAAAAGATTAGTGAGCGAATGAGGCTGCTTCAAGAACTTGTTCCAGGTTGCAACAAGATAACTGGCAAAGCCGTAATGCTGGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACAGTGAACCCAGAACTAAACTTTGATGTAGACAGGATTCTATCCAAGGATATTCTTCAATCACGCATAGGACATGGAATTGGTGCATATGGTCCTGGTATCAATTCCTCTCACACATTCCCCAGTGGAAATTTCCATGGAACATTGGCTGGCATGCCTAGTACATCATCACAATTCCCTCCTTTGCCCCAGAATGTTTTGGACCATGAGTTCCAAAGCTTCTATGGAATTGGATACGATTCTAATACAGCACTTGACAACTTGGGACCCAATGGGCGGTTGAAAACAGAGTTATAG 1290 0.4488 MGGQENAMGFQHGNENILTCPSSALSGANVNVSEMAISSVSMAKASDVANPFLASSAWDPLVSLSQAQTFGGSSMVSHTDFANANSSYPLVLENQGISNTSHLVQYMSDSNLVGMVPKVHSYASRGFSEMVGAASFGQHGSGDVANTGYPPHYNPIKEAQINGEQSQVEDSIPEEEAPGSAPSGNRRKRGLDHNSTFSPNKNAESETVKDSPGRACDGPKEHEKKPKVEQNNSADLRGKQSAKQAKDNSSQSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVDRILSKDILQSRIGHGIGAYGPGINSSHTFPSGNFHGTLAGMPSTSSQFPPLPQNVLDHEFQSFYGIGYDSNTALDNLGPNGRLKTEL* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00406 429 MobiDBLite consensus disorder prediction 233 256 - -
Phac1g00406 429 FunFam Basic helix-loop-helix transcription factor 266 338 - -
Phac1g00406 429 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 319 IPR011598 GO:0046983
Phac1g00406 429 CDD bHLH_AtBPE_like 259 344 - -
Phac1g00406 429 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 163 375 IPR024097 GO:0006355
Phac1g00406 429 SMART finulus 275 325 IPR011598 GO:0046983
Phac1g00406 429 MobiDBLite consensus disorder prediction 163 259 - -
Phac1g00406 429 Pfam Helix-loop-helix DNA-binding domain 272 320 IPR011598 GO:0046983
Phac1g00406 429 MobiDBLite consensus disorder prediction 207 232 - -
Phac1g00406 429 Gene3D - 266 340 IPR036638 GO:0046983
Phac1g00406 429 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 267 337 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00406 Phac-Chr1 2786009 2791142 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00406 1 429 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 42.202 1.08e-83 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac1g00406 HLH 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00406 - - gmx:100801930 788.489