Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00405 ATGGGGGGTCAGGAAAATGCCATGGGGTTTCAACACGGAAATGAGAACATTCTGACTTGTCCATCTTCAGCTCTCAGTGGTGCCAATGTTAATGTTTCAGAAATGGCTATTAGTTCTGTGTCTATGGCCAAGGCTTCAGATGTAGCTAACCCTTTTCTTGCTTCTTCCGCTTGGGATCCACTTGTTTCCTTGAGTCAGGCTCAAACTTTTGGAGGCTCCTCAATGGTTTCTCATACCGACTTTGCCAATGCCAACTCTTCTTACCCTCTTGTTCTGGAAAACCAAGGAATAAGCAACACTTCCCACCTTGTTCAGTACATGTCTGACTCAAATCTCGTGGGCATGGTCCCCAAGGTTCACTCCTATGCAAGTAGGGGCTTCTCAGAAATGGTTGGTGCTGCCTCTTTTGGCCAACATGGGTCTGGTGATGTGGCTAACACAGGGTATCCACCACATTATAATCCGATCAAGGAGGCTCAGATTAATGGTGAACAATCTCAGGTTGAGGACTCAATTCCTGAAGAGGAAGCACCAGGATCTGCTCCTAGTGGGAATAGAAGAAAGAGAGGGCTTGATCATAATTCTACCTTCAGCCCAAATAAGAATGCTGAGAGTGAAACTGTGAAAGATTCTCCGGGGAGGGCCTGTGATGGTCCAAAAGAACATGAAAAGAAGCCAAAAGTTGAGCAGAACAATAGTGCAGATTTGCGTGGCAAGCAATCAGCGAAGCAAGCTAAAGACAACAGTTCTCAAAGTGGAGAAGCTCCTAAAGAAAACTTCATTCACGTGAGAGCTAGAAGAGGACAGGCCACAAATAGCCACAGTCTAGCAGAAAGAGTGAGGAGAGAAAAGATTAGTGAGCGAATGAGGCTGCTTCAAGAACTTGTTCCAGGTTGCAACAAGATAACTGGCAAAGCCGTAATGCTGGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACAGTGAACCCAGAACTAAACTTTGATGTAGACAGGATTCTATCCAAGGATATTCTTCAATCACGCATAGGACATGGAATTGGTGCATATGGTCCTGGTATCAATTCCTCTCACACATTCCCCAGTGGAAATTTCCATGGAACATTGGCTGGCATGCCTAGTACATCATCACAATTCCCTCCTTTGCCCCAGGTGAAAAGACTAAAGATCTCTGAAGTGTTACTCTAA 1221 0.4488 MGGQENAMGFQHGNENILTCPSSALSGANVNVSEMAISSVSMAKASDVANPFLASSAWDPLVSLSQAQTFGGSSMVSHTDFANANSSYPLVLENQGISNTSHLVQYMSDSNLVGMVPKVHSYASRGFSEMVGAASFGQHGSGDVANTGYPPHYNPIKEAQINGEQSQVEDSIPEEEAPGSAPSGNRRKRGLDHNSTFSPNKNAESETVKDSPGRACDGPKEHEKKPKVEQNNSADLRGKQSAKQAKDNSSQSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVDRILSKDILQSRIGHGIGAYGPGINSSHTFPSGNFHGTLAGMPSTSSQFPPLPQVKRLKISEVLL* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00405 406 Pfam Helix-loop-helix DNA-binding domain 272 320 IPR011598 GO:0046983
Phac1g00405 406 MobiDBLite consensus disorder prediction 233 256 - -
Phac1g00405 406 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 267 337 IPR036638 GO:0046983
Phac1g00405 406 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 319 IPR011598 GO:0046983
Phac1g00405 406 FunFam Basic helix-loop-helix transcription factor 266 338 - -
Phac1g00405 406 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 163 370 IPR024097 GO:0006355
Phac1g00405 406 CDD bHLH_AtBPE_like 259 344 - -
Phac1g00405 406 SMART finulus 275 325 IPR011598 GO:0046983
Phac1g00405 406 MobiDBLite consensus disorder prediction 163 259 - -
Phac1g00405 406 Gene3D - 266 340 IPR036638 GO:0046983
Phac1g00405 406 MobiDBLite consensus disorder prediction 207 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00405 Phac-Chr1 2786009 2791142 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00405 1 396 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 43.035 1.51e-73 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac1g00405 HLH 4.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00405 - - gmx:100801930 721.465