Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00404 ATGAAGTCCATGAATGATGGCAACACTGATGATGGGAACAATCATAACTGGTTGGGGTTCTCTCTCTCACCCCACATGAAAATGGAAATTACTTCTTCTGCTGACCCTCCTCATCACCATCATCATCACTACTATCATCACCCTCAGGTTTCTGCTGCTGCAGCACCTTGCAACACTGTTCCAACAAACTTCTATACCTCACACCTTAACACCTCAGGAATCTGCTATGGTGTTGGAGAAAACAGTACCTTTCACCCTCCCTTGGCCATGATGCCCCTCAAGTCAGATGGGTCACTTTGCATTATGGAAGCTCTCACCAGATCACAAACCCAAGTGATGGTGCCAACTACATCCCCAAAACTCGAGGACTTCCTTGGTGGTGCAAGTATGGGAGCTCAAGACTATGGAGGACATGAAAGAGAAGCAATGGCTCTAAGCCTAGACAGCATCTACTATAGTAGCCAGAATGCAGAACCTGAAGCCAACAGAGACCATCCTTCTTCTTTGGGCCTTCTTTCTGACCCCTTCAGGCAACAAACCCATCCATATTACTCGGGGCTTGGGATTTACCAAGTGGAGGAAGAAGCAAAGCAACCCAACGTGACAGTTTGCAGCTCCCAAATGCCTCAAGTGGTGGAAGAAGGCATTGCATGCTTCAAAAACTGGGTGCCGCAAAGGGGATATTCTTCCTCTGAGCAGAATCTGGAGCAGCAGCATCAAGTGAATAACAGTAGCGGAATGGGGGAGAATCACGGTGCTTCTGGGAATGTTGGTGCTGGTGTTGGTTGTGGGGAGTTACAGTCTTTGAGCTTGTCCATGAGTCCTGGTTCTCAATCTAGCTGTGTCACAGTTCCAACTCAGATCTCATCTTCTGGAACTGAATCAGTGGTTGGGGATGCCAAAAAGAGAGGTTCTGCTAAGCTTGGCCAGAAGCAACCTGTGCATAGGAAATCCATTGACACATTCGGCCAGAGAACTTCTCAGTATAGAGGTGTGACAAGGCATCGATGGACTGGAAGATATGAAGCACATTTGTGGGATAATAGCTGCAAGAAGGAAGGGCAAACCAGGAAAGGACGACAAGTTTATTTGGGTGGTTATGATATGGAAGAGAAAGCTGCAAGAGCATATGATCTTGCGGCTCTCAAGTATTGGGGACCTTCAACGCACATAAACTTCCCGCTAGAAAATTACCAAACTGAACTTGAAGAAATGAAGAATATGAGCAGGCAGGAATATGTGGCCCACTTGAGAAGAAAGAGTAGTGGGTTTTCAAGGGGTGCCTCAATGTACAGAGGAGTGACAAGACACCATCAACATGGCAGATGGCAAGCAAGGATAGGCAGAGTTGCAGGAAATAAGGACCTTTATCTTGGGACATTCAGTACTCAAGAGGAAGCAGCTGAAGCATATGACGTAGCTGCAATCAAGTTTCGTGGGGTGAATGCTGTGACCAACTTTGACATCTCAAGATACGATGTTGAGAGGATCATGGCCAGCAACACCCTTCTTGCTGGAGAGTTGGCAAGAAGAAACAAGGAAAGTGAGCCAAGAACTGAGGCCATAGAGTACAACGTTGTTTCAAGCCAACAAGCCATAAGCAGCAGCAGGGAAGAAGCTGAGACTGTGAACAACAATGACAATAATGAGAAGGGATCATCATCAGATTGGAAGATGGGTTTGTATCATCAACAACAACAGTCAAACAGCAACAACTGTGACATGAAAACCATGAAGTGTGGAAATTATAGAGGCTCTGCTTTCTCTGTGTCCCTACAAGATCTCATTGGGATTGACTCAGTAGGATCTAGCCAGGCCATGCTAGAGGAGTCTACTAAGATAGGCACTCATTTTTCAAACCCCTCCTCGCTGGTCACCAGTTTAAGCAGCTCAAGGGAAGGTAGCCCTGACAAAACGGGTCCCACTGTGCTCTTTCCAAAGCCTCCGGTGGGGTCAAAGGTTGTCACTAGCCCTATTGCTAATGGTGTAAGTGTTGGCTCTTGGTTTCCCTCTCAAATGAGGCCAGTGGCAATGTCTCACTTGCCAGTTTTTGCTGCATGGAGTGATACCTAG 2073 0.4684 MKSMNDGNTDDGNNHNWLGFSLSPHMKMEITSSADPPHHHHHHYYHHPQVSAAAAPCNTVPTNFYTSHLNTSGICYGVGENSTFHPPLAMMPLKSDGSLCIMEALTRSQTQVMVPTTSPKLEDFLGGASMGAQDYGGHEREAMALSLDSIYYSSQNAEPEANRDHPSSLGLLSDPFRQQTHPYYSGLGIYQVEEEAKQPNVTVCSSQMPQVVEEGIACFKNWVPQRGYSSSEQNLEQQHQVNNSSGMGENHGASGNVGAGVGCGELQSLSLSMSPGSQSSCVTVPTQISSSGTESVVGDAKKRGSAKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNKESEPRTEAIEYNVVSSQQAISSSREEAETVNNNDNNEKGSSSDWKMGLYHQQQQSNSNNCDMKTMKCGNYRGSAFSVSLQDLIGIDSVGSSQAMLEESTKIGTHFSNPSSLVTSLSSSREGSPDKTGPTVLFPKPPVGSKVVTSPIANGVSVGSWFPSQMRPVAMSHLPVFAAWSDT* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00404 690 ProSiteProfiles AP2/ERF domain profile. 328 394 IPR001471 GO:0003700|GO:0006355
Phac1g00404 690 FunFam AP2-like ethylene-responsive transcription factor 429 490 - -
Phac1g00404 690 FunFam AP2-like ethylene-responsive transcription factor ANT 327 396 - -
Phac1g00404 690 CDD AP2 429 490 IPR001471 GO:0003700|GO:0006355
Phac1g00404 690 CDD AP2 327 394 IPR001471 GO:0003700|GO:0006355
Phac1g00404 690 SMART rav1_2 430 494 IPR001471 GO:0003700|GO:0006355
Phac1g00404 690 SMART rav1_2 328 400 IPR001471 GO:0003700|GO:0006355
Phac1g00404 690 SUPERFAMILY DNA-binding domain 327 396 IPR016177 GO:0003677
Phac1g00404 690 Pfam AP2 domain 328 386 IPR001471 GO:0003700|GO:0006355
Phac1g00404 690 Pfam AP2 domain 431 480 IPR001471 GO:0003700|GO:0006355
Phac1g00404 690 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 115 565 - -
Phac1g00404 690 PRINTS Ethylene responsive element binding protein signature 470 490 IPR001471 GO:0003700|GO:0006355
Phac1g00404 690 PRINTS Ethylene responsive element binding protein signature 329 340 IPR001471 GO:0003700|GO:0006355
Phac1g00404 690 Gene3D AP2/ERF domain 430 490 IPR036955 GO:0003700|GO:0006355
Phac1g00404 690 Gene3D AP2/ERF domain 327 396 IPR036955 GO:0003700|GO:0006355
Phac1g00404 690 MobiDBLite consensus disorder prediction 530 556 - -
Phac1g00404 690 MobiDBLite consensus disorder prediction 292 316 - -
Phac1g00404 690 SUPERFAMILY DNA-binding domain 429 490 IPR016177 GO:0003677
Phac1g00404 690 ProSiteProfiles AP2/ERF domain profile. 430 488 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00404 Phac-Chr1 2754616 2759316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00404 216 510 AP2-EREBP Transcription Factor Family AT1G72570 63.636 1.03e-124 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Phac1g00404 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00404 K09285 - gmx:100798179 1137.09