Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00398 ATGGCGGTTTCTTCTCTCTCTCTTACTCCTCTTTCTCTCTCCAATTCTTCTCCCTCTCTATCTTCCAAGCTAAAGTCTCCATTTTTGTGCCTTTTCTCGGGTAACTCCTTGAGGGTCACATGCCCCAAACCTCTGCACTCATCAACTGTGGTTCATGTTGCTCCGGAAGTGTTGGATTCTTCCCCTGATCCCTTGGACCCACCTCCAGAAACCCTTGATGATGACTCTGAATCCACCACTTATCAGGTTGGTGACTTGGGAACTCCCAGCACTTCGGCAATTAGCATTGGTGGTGATGCAGATGCAATGGCACCAAAGCAGAAGATTAGAATCAAGCTTAGATCTTACTGGGTGCCATTGATAGAGGATTCCTGCAAGCAGATATTAGATGCAGCAAGAACTACCAATGCAAAAACGATGGGACCTGTGCCATTGCCAACCAAGAGGCGAGTCTACTGTGTTCTTAAATCCCCTCACGTACACAAGGATGCTCGGTTCCATTTCGAGATCAGAACTCACCTGCGTCTCATTGATATTATGTATCCTACTGCTCAAACAATAGATTCTCTGATGCAACTAGATCTTCCTGCTGGTGTTGATGTGGAGGTCAAGCTCTAG 618 0.466 MAVSSLSLTPLSLSNSSPSLSSKLKSPFLCLFSGNSLRVTCPKPLHSSTVVHVAPEVLDSSPDPLDPPPETLDDDSESTTYQVGDLGTPSTSAISIGGDADAMAPKQKIRIKLRSYWVPLIEDSCKQILDAARTTNAKTMGPVPLPTKRRVYCVLKSPHVHKDARFHFEIRTHLRLIDIMYPTAQTIDSLMQLDLPAGVDVEVKL* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00398 205 FunFam 30S ribosomal protein S10 103 205 - -
Phac1g00398 205 Pfam Ribosomal protein S10p/S20e 110 204 IPR027486 -
Phac1g00398 205 NCBIfam 30S ribosomal protein S10 107 204 IPR001848 GO:0003735|GO:0005840|GO:0006412
Phac1g00398 205 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 42 205 IPR001848 GO:0003735|GO:0005840|GO:0006412
Phac1g00398 205 SMART Ribosomal_S10_2 110 204 IPR027486 -
Phac1g00398 205 MobiDBLite consensus disorder prediction 1 22 - -
Phac1g00398 205 MobiDBLite consensus disorder prediction 56 84 - -
Phac1g00398 205 PRINTS Ribosomal protein S10 family signature 164 178 IPR001848 GO:0003735|GO:0005840|GO:0006412
Phac1g00398 205 PRINTS Ribosomal protein S10 family signature 108 121 IPR001848 GO:0003735|GO:0005840|GO:0006412
Phac1g00398 205 PRINTS Ribosomal protein S10 family signature 143 158 IPR001848 GO:0003735|GO:0005840|GO:0006412
Phac1g00398 205 SUPERFAMILY Ribosomal protein S10 108 205 IPR036838 -
Phac1g00398 205 Gene3D Ribosomal protein S10 domain 98 205 IPR036838 -
Phac1g00398 205 Hamap 30S ribosomal protein S10 [rpsJ]. 106 205 IPR001848 GO:0003735|GO:0005840|GO:0006412
Phac1g00398 205 ProSitePatterns Ribosomal protein S10 signature. 132 147 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00398 Phac-Chr1 2666745 2671688 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00398 107 205 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 30.000 1.59e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00398 K02946 - gmx:100306286 314.694