LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac1g00380	ATGGTGCTGGTTGAAGGTCATCTTTTTCCGATTTTGCCGAAAGTGATCATGACTATGACGAGGGGAGAGAAGGCTGAATTAATTGTCCAACCTCAGTATGCCTTTGGGGAGACTGGAAGAGAAGCTGGAAGTGGGCTCTGTTCTATCCCTCCAAATTCAGTACTGCATGTTAATATTGAATTGGTGTCCTTCAAGTCTGTCATAAATGTTACCGGTGACTCCAAGGTGCTTAAAAAGATTTTGAAAGAAGGGGAGGGTGCTTTCACAGCCAATGAGGGTGCAAAAGTTACTGTCAGCTTCACAGCTATGCTAGAAGATGGCACTGTATTTGAGAAAAGAACTGGTGAAGAACAACCCTTGGAGTTCATAACCGATGAGGAACAAGTGATTGCTGGTCTAGATCGAGCTGTGGCAACTATGAAGAAGGGGGAGAGGGCCATTATTTCCATACATCCTGAGTATGCATTTGGAAATGTTGAAGTGAGACAAGATCTTGCTATTGTTCCACCAAGCTCAAATGTAGTCTATGACGTTGAGATGATGAATTTTATCAAGGAAAAAGCACCATGGGAATTGAATAATAAGGAGAAAATTGAGGTGGCTGAGAGGAAGAAAGAAGAAGGAAATGTACTATTTAAAGGTGACAATTACCTGCGAGCAGAGAAGAAGTATGAACAGGCAGTTGATTTTCTTAGTGACGATGGATCCTTTGAGTTTGGTGAGCAAAAGCAAGCTGACGCACTGAGAGTGTCATGCTGGTTGAATGGTGCAGCTTGTTGCCTTAAACTTAATGACTTTCGCAGAGCTATCAAGCTATGTTCACAGGTGCTTGATGTTGAATTTTGCAACGTGAAGGCTTTGTACAGACGAGCACAAGCATATATAGAAACTGGAGACTTCCTATTAGCAGATGTAGACATCAAGAAAGCTCTTGTGGTGGACCCACAAAACTGGGAGGTAAAGGTAATTCAAAAGAAATTGAAACAACTTCAAGCTGACAAAGACAAAAAAGATGCTAAGCTGTTCGAAAACATATTTGCGCGTAAAACAAAGGACTCGTCTATGGCTATAAAGAGACTGAAGGTTGAGAAAGACGAGAGGGAAAATGAAGATGATGCAAGAATGGAAGAGGATACGGTTGCTGATAGCGTAGTGACTTAA	1161	0.4177	MVLVEGHLFPILPKVIMTMTRGEKAELIVQPQYAFGETGREAGSGLCSIPPNSVLHVNIELVSFKSVINVTGDSKVLKKILKEGEGAFTANEGAKVTVSFTAMLEDGTVFEKRTGEEQPLEFITDEEQVIAGLDRAVATMKKGERAIISIHPEYAFGNVEVRQDLAIVPPSSNVVYDVEMMNFIKEKAPWELNNKEKIEVAERKKEEGNVLFKGDNYLRAEKKYEQAVDFLSDDGSFEFGEQKQADALRVSCWLNGAACCLKLNDFRRAIKLCSQVLDVEFCNVKALYRRAQAYIETGDFLLADVDIKKALVVDPQNWEVKVIQKKLKQLQADKDKKDAKLFENIFARKTKDSSMAIKRLKVEKDERENEDDARMEEDTVADSVVT*	387

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac1g00380	386	Pfam	FKBP-type peptidyl-prolyl cis-trans isomerase	89	180	IPR001179	GO:0003755
	Phac1g00380	386	Pfam	FKBP-type peptidyl-prolyl cis-trans isomerase	5	62	IPR001179	GO:0003755
	Phac1g00380	386	Gene3D	-	68	188	IPR046357	GO:0003755
	Phac1g00380	386	Gene3D	-	1	67	IPR046357	GO:0003755
	Phac1g00380	386	ProSiteProfiles	TPR repeat profile.	284	317	IPR019734	GO:0005515
	Phac1g00380	386	SMART	tpr_5	284	317	IPR019734	GO:0005515
	Phac1g00380	386	SMART	tpr_5	201	234	IPR019734	GO:0005515
	Phac1g00380	386	SMART	tpr_5	250	283	IPR019734	GO:0005515
	Phac1g00380	386	SUPERFAMILY	FKBP-like	6	66	-	-
	Phac1g00380	386	Gene3D	Tetratricopeptide repeat domain	189	344	IPR011990	GO:0005515
	Phac1g00380	386	MobiDBLite	consensus disorder prediction	360	386	-	-
	Phac1g00380	386	SUPERFAMILY	TPR-like	194	345	IPR011990	GO:0005515
	Phac1g00380	386	Coils	Coil	320	340	-	-
	Phac1g00380	386	PANTHER	PEPTIDYLPROLYL ISOMERASE	68	374	-	-
	Phac1g00380	386	SUPERFAMILY	FKBP-like	70	203	-	-
	Phac1g00380	386	ProSiteProfiles	FKBP-type peptidyl-prolyl cis-trans isomerase domain profile.	1	65	IPR001179	GO:0003755
	Phac1g00380	386	ProSiteProfiles	FKBP-type peptidyl-prolyl cis-trans isomerase domain profile.	93	184	IPR001179	GO:0003755
	Phac1g00380	386	FunFam	Peptidylprolyl isomerase	66	186	-	-
	Phac1g00380	386	FunFam	Peptidylprolyl isomerase	189	344	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac1g00380	Phac-Chr1	2513033	2518651	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac1g00380	5	348	Calmodulin-binding Proteins	AT3G25230	55.202	4.51e-128	378

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac1g00380	K09571		-	gmx:100798382	623.624