Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00364 ATGGGAACCGAGAGCTACACTTACCTAGGACGCAATTTCAGCCAACTCAGCATCAACGACGCTTCCTCTTCCTCCGCCTTCAGCGACTGCAACAGTGACAGATCTGGCGAATTCGCTACCGCTTCTTCGCAAACGCGCCGCTTCCTCATCACCTGCGCCACCGAAAATTCCGACGACTTGATCCGTCAACTCGTCGCCGATCTCCACTCCGCCTCACTCGACGATCAGAAACAAGCCGCCATGGAAATCAGATTGCTCGCCAAGAACAAGCCCGAGAATCGACTCAAAATCGCCAAAGCCGGCGCAATCAAACCGCTGATTTCACTCATTTCCTCGCCGGACCTCCAGCTCCAGGAATACGGCGTCACCGCGATTTTGAATCTCTCGCTCTGCGATGAGAACAAGGAGGCCATCGCATCCACCGGCGCGATTAAGCCACTGGTTCGCGCGCTGAGCACGGGAACCGCGACGGCGAAGGAGAACGCGGCGTGCGCGCTGCTGCGGCTGTCGCAGGTCGAGGAGAACAAGGCGGCGATTGGTCGTTCCGGCGCGATTCCGGCGCTGGTGAGCCTTCTGGAGAGCGGCGGGTTCCGCGCGAAGAAGGACGCGTCGACGGCGCTGTACTCGCTGTGCACGGTGAAGGAGAACAAGCTCAGGGCGGTGAAGGCGGGGATCATGAAGGTGCTGGTGGAGCTGATGGCGGACTTCGAGTCGAACATGGTGGACAAGTCCGCGTACGTGGTCAGCGTGCTGGTGACGGTGCCGGAAGCGAGGGCGGCGCTGGTGGAGGAAGGCGGCGTGCCGGTGCTGGTTGAGATCGTTGAGGTCGGAACACAGAGGCAGAAGGAAATCGCGGTTGTTATTCTGTTGCAGGTGTGCGAAGATAGCGTGACGTATCGCTCTATGGTGGCTCGCGAAGGTGCGATTCCTCCTTTGGTGGCTTTGTCTCAGTCCGGCACCAATCGCGCCAAGCAAAAGGCGGAGAAATTAATTGAACTTTTGCGGCAACCAAGATCCAGCAACGGCGGTGGTCGTGCGTCAGAACTGGCGGTGTAA 1056 0.5909 MGTESYTYLGRNFSQLSINDASSSSAFSDCNSDRSGEFATASSQTRRFLITCATENSDDLIRQLVADLHSASLDDQKQAAMEIRLLAKNKPENRLKIAKAGAIKPLISLISSPDLQLQEYGVTAILNLSLCDENKEAIASTGAIKPLVRALSTGTATAKENAACALLRLSQVEENKAAIGRSGAIPALVSLLESGGFRAKKDASTALYSLCTVKENKLRAVKAGIMKVLVELMADFESNMVDKSAYVVSVLVTVPEARAALVEEGGVPVLVEIVEVGTQRQKEIAVVILLQVCEDSVTYRSMVAREGAIPPLVALSQSGTNRAKQKAEKLIELLRQPRSSNGGGRASELAV* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00364 351 SMART arm_5 90 130 IPR000225 GO:0005515
Phac1g00364 351 SMART arm_5 213 253 IPR000225 GO:0005515
Phac1g00364 351 SMART arm_5 254 294 IPR000225 GO:0005515
Phac1g00364 351 SMART arm_5 131 171 IPR000225 GO:0005515
Phac1g00364 351 SMART arm_5 172 212 IPR000225 GO:0005515
Phac1g00364 351 SUPERFAMILY ARM repeat 58 331 IPR016024 -
Phac1g00364 351 Gene3D - 200 337 IPR011989 -
Phac1g00364 351 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 101 143 IPR000225 GO:0005515
Phac1g00364 351 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 142 184 IPR000225 GO:0005515
Phac1g00364 351 FunFam RING-type E3 ubiquitin transferase 50 340 - -
Phac1g00364 351 PANTHER U BOX DOMAIN-CONTAINING 60 335 - -
Phac1g00364 351 Pfam Armadillo/beta-catenin-like repeat 132 170 IPR000225 GO:0005515
Phac1g00364 351 Pfam Armadillo/beta-catenin-like repeat 174 211 IPR000225 GO:0005515
Phac1g00364 351 Pfam Armadillo/beta-catenin-like repeat 91 129 IPR000225 GO:0005515
Phac1g00364 351 Gene3D - 33 198 IPR011989 -
Phac1g00364 351 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 183 225 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00364 Phac-Chr1 2380023 2382772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00364 42 343 U-box Gene Family AT2G23140 49.338 2.43e-87 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00364 - - vun:114195316 598.971