Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00359 ATGGCTTTGGAAGCTCTCAACTCCCCCACAACAACTGTTCCGTCTTTCCCTTTTGACCACCCAACCATTCCATGGGCAAAACGCAAGCGTTCCAAGCGTTCCCGCGACCACCCTTCCGAAGAAGAGTACCTCGCTCTCTGCCTCATCATGCTCGCCCGTGGCACCACCACCACCGCCGCTCCGCCGCCACACCCCACCCCAGATCCTTCCTCCAAGCTCACCTACAAATGCTCCGTTTGCGACAAAACCTTCCCCTCCTACCAGGCTCTCGGCGGACACAAGGCCAGCCACCGGAAACTCGCGCTCGCCGACGACCACCCCACCTCCTCCACCGCCACTTCTACCAGCCTCATCACCGCCTCCGGCAGGGCCCACGAGTGTTCCATCTGTCACAAATCCTTCCCCACAGGACAGGCCCTCGGCGGACACAAACGTTGTCACTACGAAGGTAACAACAACAATAATAATAACGGAAACAACAGCACGAGTGTTGTGACCGCCTCGGAAGGTGTGGGGTCCACTCACAGCCACAGCCACAGCCACAGCCACCACCGTGATTTTGATCTGAATATTCCTGCTTTTCCCGATTTAACAACGAAGCCTGGAGAAGACGAGGTTGAAAGCCCTCACCCTGTGATGAAGAAACCGCGTCCCTTCGTGGTTCCCAAGATCGAAATTCCTCATTTTCACTGA 693 0.5657 MALEALNSPTTTVPSFPFDHPTIPWAKRKRSKRSRDHPSEEEYLALCLIMLARGTTTTAAPPPHPTPDPSSKLTYKCSVCDKTFPSYQALGGHKASHRKLALADDHPTSSTATSTSLITASGRAHECSICHKSFPTGQALGGHKRCHYEGNNNNNNNGNNSTSVVTASEGVGSTHSHSHSHSHHRDFDLNIPAFPDLTTKPGEDEVESPHPVMKKPRPFVVPKIEIPHFH* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00359 230 Gene3D Classic Zinc Finger 73 147 - -
Phac1g00359 230 SUPERFAMILY beta-beta-alpha zinc fingers 74 147 IPR036236 -
Phac1g00359 230 MobiDBLite consensus disorder prediction 1 17 - -
Phac1g00359 230 MobiDBLite consensus disorder prediction 151 190 - -
Phac1g00359 230 MobiDBLite consensus disorder prediction 151 175 - -
Phac1g00359 230 ProSiteProfiles Zinc finger C2H2 type domain profile. 125 152 IPR013087 -
Phac1g00359 230 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 29 192 IPR044653 GO:0003700
Phac1g00359 230 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Phac1g00359 230 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Phac1g00359 230 Pfam C2H2-type zinc finger 124 148 - -
Phac1g00359 230 Pfam C2H2-type zinc finger 75 99 - -
Phac1g00359 230 MobiDBLite consensus disorder prediction 1 38 - -
Phac1g00359 230 SMART c2h2final6 75 97 IPR013087 -
Phac1g00359 230 SMART c2h2final6 125 147 IPR013087 -
Phac1g00359 230 ProSitePatterns Zinc finger C2H2 type domain signature. 127 147 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00359 Phac-Chr1 2321210 2322738 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00359 1 226 C2H2 Transcription Factor Family AT1G27730 53.498 1.39e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac1g00359 zf-C2H2_6 8.8e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00359 - - gmx:547886 333.569