Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00341 ATGGCTCTTCTACTTGACAACTGTGACAGCATTTTGCTCTCTTTGGACACACACAAATCAGTTCCTGCACCTTTCCTTACCAAAACATACCAACTTGTGGACGACCCCTCCACCGACCACATAGTCTCTTGGGGCGAAGACCACGCCACCTTCGTTGTTTGGCGCCCCCCAGAGTTCGCTAGGGACCTTCTCCCCAACTACTTCAAACACAACAACTTCTCAAGCTTCGTTCGCCAACTCAACACCTATGGTTTCAGAAAGATTGTGCCTGATAGGTGGGAGTTCGCAAATGAGTTCTTCAAGAAAGGAGAGAAGCAGTTGTTGTGCGAGATCCACAGAAGGAAAACCCATCAGCAGCATCACCAACAAGTGCACCATCATCAGTTTGGACTCAATGTTCCCCCTTTCTTTCCCTTCCACAACACACTCACTGTGGCCCCGCCCCATGACTCGGACGAGTTACCCAATTGCTGCGACTCACCCCCTAGAGCAGTTACAACTGAAAACAACATCATAATCAACAACAACACCACCACCACCAACAGCTACAACACTGTCACTGCACTTTCTGAGGACAACGAAAGACTTAGGAGAAGCAACAACATGCTCATGTCAGAGCTCGCACACATGAAGAAGCTTTACAACGACATCATCTACTTTGTTCAGAACCATGTCAAACCCGTGGCTCCAAGCAACACTTACCCTTCTCTTCTACTATGCAGTAACAACAACAACAGCAAATCATCACAACCCTCTCACATAAATAACGTGTCGGTGAAACAGTTTGTGGGATGTTATTCGAACAACACTAAGCAAGCGCGTGCTGTGAACTCTCCAACCAACAGCTCCATCACCATTGTTGAAGAAGAACCTAGCAGTAACAGCTGCAAGACCAAGCTTTTCGGGGTGTCTCTTCAATCCAAGAAAAGGGTGCACCCCGAGTACGGATCTAACAATCTTCAAACTTCAGAAACAAATAAGTCGCGTTTGGTGGTGGAAAATGATGAATTCTTTGGCTTGAATCTCATGCCCCCTTCAACTTGTTTGTTATAG 1053 0.4672 MALLLDNCDSILLSLDTHKSVPAPFLTKTYQLVDDPSTDHIVSWGEDHATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKQLLCEIHRRKTHQQHHQQVHHHQFGLNVPPFFPFHNTLTVAPPHDSDELPNCCDSPPRAVTTENNIIINNNTTTTNSYNTVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNTYPSLLLCSNNNNSKSSQPSHINNVSVKQFVGCYSNNTKQARAVNSPTNSSITIVEEEPSSNSCKTKLFGVSLQSKKRVHPEYGSNNLQTSETNKSRLVVENDEFFGLNLMPPSTCLL* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00341 350 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac1g00341 350 Coils Coil 186 206 - -
Phac1g00341 350 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac1g00341 350 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 281 IPR027725 -
Phac1g00341 350 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac1g00341 350 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac1g00341 350 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac1g00341 350 Gene3D - 17 116 IPR036388 -
Phac1g00341 350 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac1g00341 350 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Phac1g00341 350 FunFam Heat stress transcription factor B-4 17 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00341 Phac-Chr1 2202056 2204270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00341 19 347 HSF AT1G46264 56.936 5.47e-109 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phac1g00341 HSF_DNA-bind 7.7e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00341 K09419 - gmx:100782841 553.518