Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00338 ATGGCTGGTGACATGCACCAACCACAACCCTCTCTTGCCAGAAACTTCCCTCCTAATTCAGAAGACTTCTCAACCTTCTTCAACCAACTCCTCCACAACCCTCCCCCACTAGGAATGGACCCTAATCATTCTGCTTCTGATTTCACCCCACACAACAACACCAACAACCCTGTTCCTTCCTCTCCCTCAACTTTCCATTTCTCTCACCCCATCCCTGCCACCACCTTCAAACAACACAACAATAATCACAACCCTGATTTCACTTCTTCTGCTGAGAAGAGTGTGGAGGCAAGGAAACCTGTCCCACCACCACGTTCTTCGTCAAAGAGGAGTAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGAAGGAGCAGGATTAACGAGAAAATGAAAGCCTTGCAGAAATTAATTCCAAATTCTAACAAGACAGACAAAGCTTCGATGCTAGATGAGGCCATAGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAAATGTTAATGATGAGAAATGGTTTTAGCTTGCATCCAATGTCTTTGCCAGGAGAACAAAGACCTAATATAATGCCTCAGACTGGGTTGAACCTTGATGAGAGTGATGGACTTCAGAATTCTACTAGTGCAATTGCATCATCTTCAAAAGAAGAAAACTTGATTCGGCATGCTTTTAGTTTTCCGAAGCAATGCAGCATCTCAGATCAGTCTGCTGTTCTACCCTCAGTGACAAGATTAGCTACTTCGAATGCCCCATCCAATTTTCATCCTTCTATTAAGGATACACTCTACGACAGCATGCCCCAACTGTTTATGGATGCACCAAAGATTGGGAAGGACCCTTCTCCAGACTTGTCTTAA 858 0.4371 MAGDMHQPQPSLARNFPPNSEDFSTFFNQLLHNPPPLGMDPNHSASDFTPHNNTNNPVPSSPSTFHFSHPIPATTFKQHNNNHNPDFTSSAEKSVEARKPVPPPRSSSKRSRAAEFHNLSEKRRRSRINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGFSLHPMSLPGEQRPNIMPQTGLNLDESDGLQNSTSAIASSSKEENLIRHAFSFPKQCSISDQSAVLPSVTRLATSNAPSNFHPSIKDTLYDSMPQLFMDAPKIGKDPSPDLS* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00338 285 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 112 161 IPR011598 GO:0046983
Phac1g00338 285 SMART finulus 118 167 IPR011598 GO:0046983
Phac1g00338 285 MobiDBLite consensus disorder prediction 45 91 - -
Phac1g00338 285 FunFam Basic helix-loop-helix transcription factor 107 170 - -
Phac1g00338 285 Pfam Helix-loop-helix DNA-binding domain 116 162 IPR011598 GO:0046983
Phac1g00338 285 Gene3D - 107 171 IPR036638 GO:0046983
Phac1g00338 285 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 12 258 IPR031066 -
Phac1g00338 285 MobiDBLite consensus disorder prediction 1 124 - -
Phac1g00338 285 MobiDBLite consensus disorder prediction 12 31 - -
Phac1g00338 285 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 109 172 IPR036638 GO:0046983
Phac1g00338 285 CDD bHLH_AtPIF_like 112 174 IPR047265 -
Phac1g00338 285 MobiDBLite consensus disorder prediction 110 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00338 Phac-Chr1 2172594 2176287 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00338 111 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 66.957 1.29e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac1g00338 HLH 1.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00338 - - gmx:100785332 386.726