Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00337 ATGGCTGGTGACATGCACCAACCACAACCCTCTCTTGCCAGAAACTTCCCTCCTAATTCAGAAGACTTCTCAACCTTCTTCAACCAACTCCTCCACAACCCTCCCCCACTAGGAATGGACCCTAATCATTCTGCTTCTGATTTCACCCCACACAACAACACCAACAACCCTGTTCCTTCCTCTCCCTCAACTTTCCATTTCTCTCACCCCATCCCTGCCACCACCTTCAAACAACACAACAATAATCACAACCCTGATTTCACTTCTTCTGCTGAGAGTGTGGAGGCAAGGAAACCTGTCCCACCACCACGTTCTTCGTCAAAGAGGAGTAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGAAGGAGCAGGATTAACGAGAAAATGAAAGCCTTGCAGAAATTAATTCCAAATTCTAACAAGACAGACAAAGCTTCGATGCTAGATGAGGCCATAGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAAATGTTAATGATGAGAAATGGTTTTAGCTTGCATCCAATGTCTTTGCCAGGAGAACAAAGACCTAATATAATGCCTCAGACTGGGTTGAACCTTGATGAGAGTGATGGACTTCAGAATTCTACTAGTGCAATTGCATCATCTTCAAAAGAAGAAAACTTGATTCGGCATGCTTTTAGTTTTCCGAAGCAATGCAGCATCTCAGATCAGTCTGCTGTTCTACCCTCAGTGACAAGATTAGCTACTTCGAATGCCCCATCCAATTTTCATCCTTCTATTAAGGATACACTCTACGACAGCATGCCCCAACTGTTTATGGATGCACCAAAGATTGGGAAGGACCCTTCTCCAGACTTGTCTTAA 855 0.4374 MAGDMHQPQPSLARNFPPNSEDFSTFFNQLLHNPPPLGMDPNHSASDFTPHNNTNNPVPSSPSTFHFSHPIPATTFKQHNNNHNPDFTSSAESVEARKPVPPPRSSSKRSRAAEFHNLSEKRRRSRINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGFSLHPMSLPGEQRPNIMPQTGLNLDESDGLQNSTSAIASSSKEENLIRHAFSFPKQCSISDQSAVLPSVTRLATSNAPSNFHPSIKDTLYDSMPQLFMDAPKIGKDPSPDLS* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00337 284 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 12 257 IPR031066 -
Phac1g00337 284 FunFam Basic helix-loop-helix transcription factor 106 169 - -
Phac1g00337 284 MobiDBLite consensus disorder prediction 45 91 - -
Phac1g00337 284 CDD bHLH_AtPIF_like 111 173 IPR047265 -
Phac1g00337 284 MobiDBLite consensus disorder prediction 1 123 - -
Phac1g00337 284 MobiDBLite consensus disorder prediction 109 123 - -
Phac1g00337 284 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 111 160 IPR011598 GO:0046983
Phac1g00337 284 Pfam Helix-loop-helix DNA-binding domain 115 161 IPR011598 GO:0046983
Phac1g00337 284 MobiDBLite consensus disorder prediction 12 31 - -
Phac1g00337 284 SMART finulus 117 166 IPR011598 GO:0046983
Phac1g00337 284 Gene3D - 106 170 IPR036638 GO:0046983
Phac1g00337 284 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 108 171 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00337 Phac-Chr1 2172594 2176287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00337 110 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 66.957 1.26e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac1g00337 HLH 1.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00337 - - gmx:100785332 382.489