Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00336 ATGCAAGGGCAGAGAGGCACAATTGGTTCCTTGCAAGAAACCATAGAATTTGATACATCAAGTACTGCTACAGTTGAGCAACATATTTTCTGGAACAATATGCGTAATCCTGCAGAGAATCATTTTGCACTTCCCCCCAGTGATTTAAACCCGTCGTACGCAAATCCTATAAACCATGAATGGCAGAACCTTAGTGGATGGAGCCTAGGTGAGCCAAGTTCCAGTAATACTCAGAATGAGGTTACTAACAATGAGCAGAAAGGAGAGGTAGGATTATCATCTTCAATAAGTTCTGGTCCTATAGCTGGTCCAAGACTTGAAGAAAGGCGCTTTGAACCAAACAATACTTTTTCGTTGGACAATGTCAATACAAGTTCCATGTATATGCGCAGCTCCAATTCTCACTTGGTGCCTCAGAATCTCAACCTAAATGCAAGCTTAGCAGATAGTGTCACTGTCACTGATAATGGCTATCGTGTGGAACATCCTAACTTGAACAAGTCTAATGGACCGGTAAATGAGCATATTCCACCTTCAATTGGTTCTGGTCCTTTTCTGCTTCCTTCTGGCACTAATGGCTTTTTGGTCGAGGACACTGATGGTAGGCCTGGTTGTTCTCTAGACACTCGCCGTGTATCGTGTAAAAGAAAGGCTGTTGAACGAAGTGTTGGGCAATCTTCAGGTGGTGGAAGTTCTAGCTATACTCAGCATACAGATGGTAGTACTTGGAACACTCTTCCTACTCAGGATTATGGTGGAAGCAGTTTTAACAGATCTGCCTCAACAGAACAGGTAAATGCAAGACTCTGTCTGAGTACTGGGGATGGAGCATCTGAGAGCATTCCTTGGTCAAATGTTGCAGGAAGCTCAGAAAGCTTCCACAGAAATTTTCGTGTGAGGATAAATCCTTCAAGCCAACAAATTTCTGTTCCCCCTCCTGCAATCTCAAGTGGGAGTGTTATTAGGAATTCTGGTGTTTCTTCATCCTCTCCAATGTTGCAACGGTTTCACCCTGTTGATAATTCTTTGGACTTGAGGTCAGCACCACCTGTTGATACTATGGTTCCTCAAAGCCAGCCCCTAGTAATCCATGTTCCAGCTTTACCAAGGAATGTGCAGCCATTCAGGTGGAATGGAGGTTCCAGCTCAACAAACAATCATCCTTCAAACTCAGTTATATGTGCAGATAGAAATAATTTACCAAACGAGGAACCAAGTTCAAGAAGTATGCCTAGAAACATAGTAGAATACCCTATGTTTGTGCCTGCAACCAATTTAAGAAATGTGGTTAGAAATCCAGCTAGAGCTTCAAATAGTGCAAATTTAAGTATTCCAGGAAATGTTGGTTCTTCATCGAGGGCAGGCTCAAATTCAGCTGTCAATCCACCATCTGCTCCGGCGTGGGTTTCTCGCCCGAATCCTCAGCAGTATCCTCGCAGGTTATCGGAATATGTTCGTCGGTCTTTGTTTTCTCCTGGTTTGGAAGCTGCTGGAAGTTCAAGCAACAATTATGCTTCCTTCCGTGGTCCTTCTACTTCATCTGGGGTAAACCCATTTGAGAGGCAAGGTGATGGTGAATTTGGAATTCAGTATTCTTTACGATCATTGGCTGCTGCTGGTGAAGGAAGTAGTAGACTTGTATCTGAGCTCCGCAATGTATTGGGCCTCATGCGTAGGGGTGGGAACCTACGATTTGAGGATGTTATGATCCTGGACCATTCAGTGTTCGCTGGAATTGCTGATATTCATGATCGACACAGGGATATGCGACTTGATGTTGATAACATGTCTTATGAGGAGCTATTGGCTTTGGAAGAACGCATTGGAAATGTGAGCACTGGCTTGAATGAGGAGACCATATTAAAACACATGAAAAATAAGAAGTATTCAGCTAAACCAGGTTCTCAGCATGAGGCAGAACCCTGTTGTGTTTGTCAGGAGGAGTACAAAGATGGAGATGCTTTAGGGTCACTGGATTGTGGGCATGATTACCATACCGAATGCATTAAGCAGTGGCTAATGCATAAGAATCTGTGTCCCATTTGTAAGACAACAGGGTTGAAAACATGA 2070 0.4353 MQGQRGTIGSLQETIEFDTSSTATVEQHIFWNNMRNPAENHFALPPSDLNPSYANPINHEWQNLSGWSLGEPSSSNTQNEVTNNEQKGEVGLSSSISSGPIAGPRLEERRFEPNNTFSLDNVNTSSMYMRSSNSHLVPQNLNLNASLADSVTVTDNGYRVEHPNLNKSNGPVNEHIPPSIGSGPFLLPSGTNGFLVEDTDGRPGCSLDTRRVSCKRKAVERSVGQSSGGGSSSYTQHTDGSTWNTLPTQDYGGSSFNRSASTEQVNARLCLSTGDGASESIPWSNVAGSSESFHRNFRVRINPSSQQISVPPPAISSGSVIRNSGVSSSSPMLQRFHPVDNSLDLRSAPPVDTMVPQSQPLVIHVPALPRNVQPFRWNGGSSSTNNHPSNSVICADRNNLPNEEPSSRSMPRNIVEYPMFVPATNLRNVVRNPARASNSANLSIPGNVGSSSRAGSNSAVNPPSAPAWVSRPNPQQYPRRLSEYVRRSLFSPGLEAAGSSSNNYASFRGPSTSSGVNPFERQGDGEFGIQYSLRSLAAAGEGSSRLVSELRNVLGLMRRGGNLRFEDVMILDHSVFAGIADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLNEETILKHMKNKKYSAKPGSQHEAEPCCVCQEEYKDGDALGSLDCGHDYHTECIKQWLMHKNLCPICKTTGLKT* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00336 689 Pfam Ring finger domain 642 683 IPR001841 -
Phac1g00336 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 606 686 IPR013083 -
Phac1g00336 689 MobiDBLite consensus disorder prediction 224 259 - -
Phac1g00336 689 MobiDBLite consensus disorder prediction 377 409 - -
Phac1g00336 689 ProSiteProfiles Zinc finger RING-type profile. 642 683 IPR001841 -
Phac1g00336 689 FunFam E3 ubiquitin-protein ligase MBR2 610 687 - -
Phac1g00336 689 MobiDBLite consensus disorder prediction 216 259 - -
Phac1g00336 689 MobiDBLite consensus disorder prediction 377 411 - -
Phac1g00336 689 MobiDBLite consensus disorder prediction 437 464 - -
Phac1g00336 689 SMART ring_2 642 682 IPR001841 -
Phac1g00336 689 MobiDBLite consensus disorder prediction 495 517 - -
Phac1g00336 689 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 210 687 IPR045191 GO:0061630
Phac1g00336 689 MobiDBLite consensus disorder prediction 64 117 - -
Phac1g00336 689 MobiDBLite consensus disorder prediction 64 100 - -
Phac1g00336 689 MobiDBLite consensus disorder prediction 437 475 - -
Phac1g00336 689 SUPERFAMILY RING/U-box 641 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00336 Phac-Chr1 2161235 2166661 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00336 1 689 C3H Transcription Factor Family AT2G15530 32.935 4.53e-86 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00336 - - lja:Lj0g3v0173889.1 959.903