Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Phac1g00332 | ATGGCGCAGATTCAGGCACAGCAGCACCAGAGTCCAGTGTCGGCTCCGCCAAATGGCGTCGCTCCGGCGCCGAACGCGAACCAGTTCGTGACGACCTCGCTGTACGTCGGCGATCTTGACCAGAATGTCAACGACTCGCAGCTCTACGATCTGTTCAACCAGGTCGGGCAAGTCGTTTCTGTTCGAGTCTGCAGGGACCTGACCACTCGTCGTTCACTCGGTTACGGTTATGTCAATTACAGTAACCCTCAGGATGCGGCGAGGGCATTGGATGTGCTGAATTTCACTCCACTGAACAACAAATCTATTAGGATCATGTATTCTCATCGGGATCCTAGTATTCGGAAGAGTGGCACTGCGAATATTTTTATCAAGAATTTGGATAAGGCTATTGACCACAAGGCCTTACATGATACTTTTTCTTCTTTTGGACACATTCTTTCTTGCAAAATAGCAACAGATGCTTCTGGCCTGTCTAAAGGTTATGGTTTTGTTCAATTTGACAATGAAGAGGCTGCACAGAATGCTATAGACAAGTTAAATGGCATGCTGATCAATGATAAGCAGGTCTATGTAGGTCATTTCCTGCGAAAGCAGGATAGAGATAATGCTCTCAGTAAGACAAAATTCAATAATGTCTATGTGAAAAACCTATCAGATTCAACCACAGATGAAGAGTTGAAGAAAGTTTTTGGAGAATATGGTACCATTACCAGTGCTGTAGTAATGAGAGATGCGGATGGTAAATCTAAGTGTTTTGGTTTCGTCAATTTTGAAAACCCAGACGATGCTGCCAAAGCTGTTGAGGGGCTTAATGGGAAGAAATTTGATGAGAAGGAGTGGTATGTTGGAAAAGCCCAGAAAAAATCTGAGCGTGAACTTGAATTGAAAGGAAGATTTGAGCAGAGTATAAAGGAAGCTGCTGACAAATTTCAGGGTGTGAACTTGTATCTAAAGAACTTGGATGATACTCTTAGTGATGAAAATCTTAGAGATATGTTTTCTGAGTATGGTACAATATCTTCGTACAAGGTAATGCGTGACCCAAACGGAATTAGTAGAGGATCGGGATTTGTTGCATTTTCAACTCCTGAAGAGGCATCTCGTGCTCTTGCTGAGATGAATGGTAAAATGATTGCTGGAAAACCTCTGTATGTTGCCCTGGCACAGAGAAAAGAAGAGAGAAGAGCAAGGTTACAGATGAGGCCTGTTGCAATTACGCCATCTGTGGCACCCCGTATGCCTCTCTATCCTCCTGGTGCTCCTGGTATAGGACAACAATTTATGTATGGGCAAGGACCCCCCACCATGATTCCACCCCAAGCTGGATTTGGTTACCAGCAGCAACTAGTTCCTGGAATGAGGCCCGGTGGTGGTCCAATGCCTAGCTTCTTTGTTCCTCTGGTTCAGCAGGGGCAACAAGGGCAGCGTCCAGGCGGTCGCCGTGGAGCAGGTCCCGTGCAACAACCTCAACAGCCGTTGCCAATGATGCAGCAGCAGATGCTTCCAAGGGGACGAGTCTATCGTTATCCTCCTGGCCGCAACATGCAAGATGTCCCACTCCCAGGTGTAGCTGGTGGGATGATGTCAGTCCCCTATGACATGGGGGGTCTGCCAATCCGTGATGCTGTGGGACAGCCAATGCCTATTCAAGCTTTGGCTACTGCCCTTGCCAATGCTCCACCTGAACAGCAGAGGACTATGCTGGGTGAAGCTTTATACCCGCTTGTGGATCAGCTGGAACATGACGCAGCAGCAAAGGTTACTGGCATGCTCTTGGAGATGGACCAGCCTGAAGTCCTTCATCTGATTGAGTCACCGGATGCTCTGAAGGCGAAAGTTGCTGAAGCCATGGATGTACTGAGAAATGTTGCTCAACAGCAAACCAACCCTGCTGATCAACTTGCCTCACTCTCTCTCAATGACAATCTTGTGTCTTAG | 1941 | 0.4719 | MAQIQAQQHQSPVSAPPNGVAPAPNANQFVTTSLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTANIFIKNLDKAIDHKALHDTFSSFGHILSCKIATDASGLSKGYGFVQFDNEEAAQNAIDKLNGMLINDKQVYVGHFLRKQDRDNALSKTKFNNVYVKNLSDSTTDEELKKVFGEYGTITSAVVMRDADGKSKCFGFVNFENPDDAAKAVEGLNGKKFDEKEWYVGKAQKKSERELELKGRFEQSIKEAADKFQGVNLYLKNLDDTLSDENLRDMFSEYGTISSYKVMRDPNGISRGSGFVAFSTPEEASRALAEMNGKMIAGKPLYVALAQRKEERRARLQMRPVAITPSVAPRMPLYPPGAPGIGQQFMYGQGPPTMIPPQAGFGYQQQLVPGMRPGGGPMPSFFVPLVQQGQQGQRPGGRRGAGPVQQPQQPLPMMQQQMLPRGRVYRYPPGRNMQDVPLPGVAGGMMSVPYDMGGLPIRDAVGQPMPIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVAQQQTNPADQLASLSLNDNLVS* | 647 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Phac1g00332 | 646 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Phac1g00332 | 646 | SUPERFAMILY | RNA-binding domain, RBD | 211 | 395 | IPR035979 | GO:0003676 | |
Phac1g00332 | 646 | Gene3D | - | 115 | 200 | IPR012677 | - | |
Phac1g00332 | 646 | PANTHER | RNA BINDING PROTEIN | 29 | 94 | - | - | |
Phac1g00332 | 646 | SUPERFAMILY | RNA-binding domain, RBD | 32 | 201 | IPR035979 | GO:0003676 | |
Phac1g00332 | 646 | Pfam | Poly-adenylate binding protein, unique domain | 557 | 621 | IPR002004 | GO:0003723 | |
Phac1g00332 | 646 | SMART | rrm2_1 | 315 | 387 | IPR003954 | GO:0003676 | |
Phac1g00332 | 646 | SMART | rrm2_1 | 33 | 106 | IPR003954 | GO:0003676 | |
Phac1g00332 | 646 | SMART | rrm2_1 | 212 | 284 | IPR003954 | GO:0003676 | |
Phac1g00332 | 646 | SMART | rrm2_1 | 121 | 193 | IPR003954 | GO:0003676 | |
Phac1g00332 | 646 | Gene3D | - | 1 | 114 | IPR012677 | - | |
Phac1g00332 | 646 | Gene3D | - | 201 | 298 | IPR012677 | - | |
Phac1g00332 | 646 | Gene3D | - | 299 | 402 | IPR012677 | - | |
Phac1g00332 | 646 | FunFam | Polyadenylate-binding protein | 19 | 120 | - | - | |
Phac1g00332 | 646 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 213 | 281 | IPR000504 | GO:0003723 | |
Phac1g00332 | 646 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 316 | 384 | IPR000504 | GO:0003723 | |
Phac1g00332 | 646 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 34 | 104 | IPR000504 | GO:0003723 | |
Phac1g00332 | 646 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 122 | 190 | IPR000504 | GO:0003723 | |
Phac1g00332 | 646 | SMART | rrm1_1 | 315 | 387 | IPR000504 | GO:0003723 | |
Phac1g00332 | 646 | SMART | rrm1_1 | 212 | 284 | IPR000504 | GO:0003723 | |
Phac1g00332 | 646 | SMART | rrm1_1 | 33 | 106 | IPR000504 | GO:0003723 | |
Phac1g00332 | 646 | SMART | rrm1_1 | 121 | 193 | IPR000504 | GO:0003723 | |
Phac1g00332 | 646 | FunFam | Polyadenylate-binding protein | 121 | 194 | - | - | |
Phac1g00332 | 646 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Phac1g00332 | 646 | FunFam | Polyadenylate-binding protein | 545 | 627 | - | - | |
Phac1g00332 | 646 | SMART | poly_2 | 561 | 624 | IPR002004 | GO:0003723 | |
Phac1g00332 | 646 | CDD | RRM3_I_PABPs | 210 | 289 | - | - | |
Phac1g00332 | 646 | FunFam | Polyadenylate-binding protein | 201 | 296 | - | - | |
Phac1g00332 | 646 | Gene3D | - | 545 | 628 | - | - | |
Phac1g00332 | 646 | SUPERFAMILY | PABC (PABP) domain | 491 | 637 | IPR036053 | GO:0003723 | |
Phac1g00332 | 646 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 120 | 197 | IPR000504 | GO:0003723 | |
Phac1g00332 | 646 | CDD | RRM4_I_PABPs | 313 | 391 | - | - | |
Phac1g00332 | 646 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 33 | 622 | IPR006515 | GO:0003723 | |
Phac1g00332 | 646 | FunFam | Polyadenylate-binding protein | 297 | 402 | - | - | |
Phac1g00332 | 646 | CDD | RRM2_I_PABPs | 118 | 194 | IPR045305 | - | |
Phac1g00332 | 646 | MobiDBLite | consensus disorder prediction | 471 | 491 | - | - | |
Phac1g00332 | 646 | CDD | RRM1_I_PABPs | 33 | 112 | IPR034364 | - | |
Phac1g00332 | 646 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 314 | 391 | IPR000504 | GO:0003723 | |
Phac1g00332 | 646 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 211 | 288 | IPR000504 | GO:0003723 | |
Phac1g00332 | 646 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 32 | 110 | IPR000504 | GO:0003723 | |
Phac1g00332 | 646 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 549 | 626 | IPR002004 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Phac1g00332 | Phac-Chr1 | 2138831 | 2143648 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Phac1g00332 | 1 | 641 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 67.127 | 0.0 | 845 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Phac1g00332 | K13126 | - | gmx:100784442 | 1093.95 |