Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00308 ATGGCATCGGGAAGCAGAGATATGGATCGGGTCAAGGGCCCGTGGAGCCCGGAGGAGGACGAGGCGCTGCAGAGGCTGGTGCAGGCCCTTGGGCCCAGGAACTGGACGGTGATAAGCAAGTCTATTCCGGGTCGATCCGGGAAATCATGCCGGCTAAGGTGGTGCAACCAGCTCTCGCCGGAGGTGGAGCACCGCCCGTTCTCGCCGGAAGAGGACGATGCTATTGTCAGGGCGCACGGTAGGTTCGGTAACAAGTGGGCCACCATAGCACGTTTACTCAACGGCCGCACTGATAACGCCGTCAAAAACCACTGGAACTCCACTCTCAAGAGAAAATGCTCCGCCGTTAGTCTCGATGCAACCGATCGTCCACCGCTTAAAAGATCCGCCAGCGTCGGCGCGGGTTATTTAAACCCGAGCAGCCCATCCGGGTCTGAGTTAAGCGATCCGGGCCAGCCCGCTCTGTCGACCCCTTCCGCCTCCGCCCGTTGCAGGCCCAATCTCATGGAAACCGCTTCTTCACCCTCCGATCCAGCAACGTCACTGAGTTTGTGTCTCCCTGGGTTAGGCTCCGAGCCTAGCCTTGTTGCTGCACCGCGGCCAGCATCATCGCCGCCGCCAGTGTCTCCGCCGCCTCCCCCTCCAGCGGCGGTTGAGGAGCGTGGGAAGCAATTGTTCAACGCGGAGTTTTTGAGGGTGATGCAAGAGATGATAAGGAAGGAAGTGAGGAGTTACATGTCAGGGATGGAGCTGAAGAATGGCTTGAGAATACAAACAGAAGCCATTGGAAACGCGGTGGTGAAGCGCATGGGAATCAGCCACATCGAGTGA 831 0.5884 MASGSRDMDRVKGPWSPEEDEALQRLVQALGPRNWTVISKSIPGRSGKSCRLRWCNQLSPEVEHRPFSPEEDDAIVRAHGRFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCSAVSLDATDRPPLKRSASVGAGYLNPSSPSGSELSDPGQPALSTPSASARCRPNLMETASSPSDPATSLSLCLPGLGSEPSLVAAPRPASSPPPVSPPPPPPAAVEERGKQLFNAEFLRVMQEMIRKEVRSYMSGMELKNGLRIQTEAIGNAVVKRMGISHIE* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00308 276 Gene3D - 11 63 - -
Phac1g00308 276 FunFam Transcription factor MYB44 66 112 - -
Phac1g00308 276 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Phac1g00308 276 Pfam Myb-like DNA-binding domain 66 108 IPR001005 -
Phac1g00308 276 Pfam Myb-like DNA-binding domain 12 58 IPR001005 -
Phac1g00308 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Phac1g00308 276 PANTHER MYB PROTEIN-RELATED 12 167 - -
Phac1g00308 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Phac1g00308 276 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Phac1g00308 276 CDD SANT 14 56 IPR001005 -
Phac1g00308 276 MobiDBLite consensus disorder prediction 134 181 - -
Phac1g00308 276 CDD SANT 66 109 IPR001005 -
Phac1g00308 276 FunFam MYB transcription factor 12 63 - -
Phac1g00308 276 SMART sant 63 111 IPR001005 -
Phac1g00308 276 SMART sant 11 60 IPR001005 -
Phac1g00308 276 MobiDBLite consensus disorder prediction 199 218 - -
Phac1g00308 276 MobiDBLite consensus disorder prediction 120 218 - -
Phac1g00308 276 Gene3D - 65 129 - -
Phac1g00308 276 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00308 Phac-Chr1 1919676 1920911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00308 6 253 MYB Transcription Factor Family AT4G37260 49.819 1.92e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phac1g00308 Myb_DNA-binding 5.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00308 K09422 - gmx:778174 414.075