Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00297 ATGTCTCTGTTTCGGTTATTGTGGGCACTACCTGTTCTGCTTCTGTGGATGGTGTGGTCAGAAGCTATTGCTAATGCAAATGATTATGAGATAAAAGGAAACATCATAGGAGAGAGCTCAATTTTGAAGTCCAAGATTGTTGTGAACATTGGAGCAGCCATAGAGTTGAACTCTCGTGTGGGAAAGGAACAGAAGATAGCAATGGAAGTTGCAATTGAAGATGTGAATCGAGAGAGTTTCTATGAGCTTGCCTTGAACTACAGTTATAACATTCATCGGAACCCATCAACTCCCACTATGGTTGCTGCGGATCTTGCAAACAGCAAACAAGTGGAAGTTGTGGTAGGAACAAATCTCGATGCAGCAACATTATTCCTCTGGATTGATGAAAACTCAAAGGATGTCCCCATCATATCTCTAACCTCACCAGCTACTCCAGAAGTAACTTCAATCCCTTTGCCACACTTCATCCAAATGGGTTATGATGTCACCCTTCACATGCACTGCATTGCTTCCATCATACACCAGTTCCATTGGCCAAAGGTTACTGCAATTTATGAACACAACAACCTCTTTGCCTCTCATTCAGACATACTCACAGCACTCTCTTACTCTCTACGCCTAGTCAATGTTGAGATCGATCACCATGTTGCTTTTCCTTCAATGGCCATTCTCTCAAACCCAATTGAGAGCATAGAACAAGAGCTCACAAGGCTCAAGAACAAGAGCAATAGGGTGTTCTTGCTTATTCAATCTTCCTTGGAGTTTGCCACTCTGCTATTTGAGAAGGCAAAGCAAATGGGAATGATGGAAAAAGGGTCAGTGTGGATCATTGCAGATGATGTGGCTAACCACCTTGATTCCTTTGATTCTTCTGTCACTTCCAACATGCAAGGCGTCATGGGGTGCAAAACCAACTTCATGGAAATGAGTCAAACGTTCAAACGTTTCAAGTTCATGTTTAGGAGAAAGTTTGCTTTGGAATACCCTGAAGAAGAAAGATCCCAACCGAGTGTCTTTGCTCTCAGGGCTTATGATGCTGTTTGGACCATTGCTAAAGCCTTGGAGAGCTCACAAGTTGGAAGCTTTTCCTTATCAGAAAATATCTTGCGTAGTGATCAAGAGGGCCTCAGTGGGAAGATAAGGTTCAAAGGAAGAATGTTATTGGAACCACCAATGTTTAAGATTGTGAATGTTATTGGAAAAGGTTACAAGGAGTTAGCATATTGGTCAATGGAGCATGGTTTTAGTGAGAGGCTTGTTGAGCATGAGGTGGTGAACACAACAACAACTAGTGCTGGTTCTGCTAGAATGCTTTTAGGTTCTGTGGATTGGCCTGGTGGGTTGAAAACAGTTCCAAAAGGTTGGGTGTACAATAGTAGTGAGGGAAAGCCTTTGAAAATTGGGGTTCCTGCTGTTGATCCATGTCCTCAGTTTGTGAATGTGAGCCATGATAAGGGACTGAATGAAACCCAATTCACTGGTTTCTCAATCAATGTCTTTGAATCAGTTGTGCAACGCCTGCCTTATCACCTGCCTTTTGTTTTTGTGCCATTTTATGGCTCTTACGATCAGATAGTTGAACATGTCGACAATAAGTACCTTGATGCTGCTGTGGGGGATATCCAAGTGGTGGAACATAGATATGCATTTGCTGAATTCAGTCATCCATATATTGAATCTGGCATAGCCATGGTAGTGAAAGTAAAGCCAGATAAATCCAAAGAAACATGGATGTTCATGGACGCTTTCACAAAAGAAATGTGGATGTTAACGGCAGCACTGCATCTGTTCATAGCACTTGTAATCTGGCTCATTGAAGGTGAAAAAAATTCGGAGCTCCAGAGTTTTGGGGCCATTCTCTGGTTTTCTGTCACCACATTATTCTTTATACATAGAGAACCTGTAAATAGCAGCTTGGCCAGAGTAGTGCTAGCACCTTGGTTATTTGCTATTCTGATAGTGACTCAAAGTTTTACAGCGAGCCTTTCATCCATGATGACAGTGTCCCATCTTGAACCAGCTGTGCCTGATATAGAAACACTGCTGAGGACAAATGCAATCATAGGGTGCAATAAGAACACTTTTTTGGTCCATTACTTAGTTGATGAACTCAAATTCCAGCCACAGAATATCATGGTCTTTGACTCCATCCATGATTTCCCAAGAGCCTTTGAGAACAAAGAAATTGTGGCTTCTTTTACCATTGCCCCTCATGCTGATGTCTTCCTAGCTACCTATTGCAAGGGCTACATCAAAGCAGGACCTACCTTGAAGCTTGGTGGATTAGGCTTTGCATTTCCAAAAGGTTCACGTTTAGCAATTGACATATCCCGAGCAACCTTAAAAGCCATAGAAAGTGGAGAAGTGCAAAAATTAGAAGAGAAAATGTTGTCGACAACTAATTGTGGATCTACAAACAACAAAATACAAAATGAACAACTTGGTCCTCAACCTTTCTTTGGCTTATTTTTCATTTGTGGAACCATTGCTCTCATAGGTTTATTGGCAACCATTGTTCACTTTGTTAGAAGGAATGCAGAAACATTTATGAATTACATATTGTTGTCACAGTTACAAATAGGATTGCAAATAATCAAACTTCTAGCTCAAAAGCATCTATACAAGTACAGAAGGAGTGCACATGCTCAAGATGCAAATAGTGGAGAAAATGTATCTCATAACAATGAGCAAGCTACACCAAGCATTGAGTTTGCAATTTACTACCACACATGA 2736 0.4119 MSLFRLLWALPVLLLWMVWSEAIANANDYEIKGNIIGESSILKSKIVVNIGAAIELNSRVGKEQKIAMEVAIEDVNRESFYELALNYSYNIHRNPSTPTMVAADLANSKQVEVVVGTNLDAATLFLWIDENSKDVPIISLTSPATPEVTSIPLPHFIQMGYDVTLHMHCIASIIHQFHWPKVTAIYEHNNLFASHSDILTALSYSLRLVNVEIDHHVAFPSMAILSNPIESIEQELTRLKNKSNRVFLLIQSSLEFATLLFEKAKQMGMMEKGSVWIIADDVANHLDSFDSSVTSNMQGVMGCKTNFMEMSQTFKRFKFMFRRKFALEYPEEERSQPSVFALRAYDAVWTIAKALESSQVGSFSLSENILRSDQEGLSGKIRFKGRMLLEPPMFKIVNVIGKGYKELAYWSMEHGFSERLVEHEVVNTTTTSAGSARMLLGSVDWPGGLKTVPKGWVYNSSEGKPLKIGVPAVDPCPQFVNVSHDKGLNETQFTGFSINVFESVVQRLPYHLPFVFVPFYGSYDQIVEHVDNKYLDAAVGDIQVVEHRYAFAEFSHPYIESGIAMVVKVKPDKSKETWMFMDAFTKEMWMLTAALHLFIALVIWLIEGEKNSELQSFGAILWFSVTTLFFIHREPVNSSLARVVLAPWLFAILIVTQSFTASLSSMMTVSHLEPAVPDIETLLRTNAIIGCNKNTFLVHYLVDELKFQPQNIMVFDSIHDFPRAFENKEIVASFTIAPHADVFLATYCKGYIKAGPTLKLGGLGFAFPKGSRLAIDISRATLKAIESGEVQKLEEKMLSTTNCGSTNNKIQNEQLGPQPFFGLFFICGTIALIGLLATIVHFVRRNAETFMNYILLSQLQIGLQIIKLLAQKHLYKYRRSAHAQDANSGENVSHNNEQATPSIEFAIYYHT* 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00297 911 CDD PBP1_GABAb_receptor_plant 49 420 IPR044440 -
Phac1g00297 911 Pfam Ligand-gated ion channel 798 828 IPR001320 GO:0015276|GO:0016020
Phac1g00297 911 Gene3D - 687 761 - -
Phac1g00297 911 FunFam Glutamate receptor 577 710 - -
Phac1g00297 911 SUPERFAMILY Periplasmic binding protein-like I 47 456 IPR028082 -
Phac1g00297 911 Pfam Receptor family ligand binding region 65 400 IPR001828 -
Phac1g00297 911 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 48 882 IPR015683 -
Phac1g00297 911 PIRSF IGluLR_plant 358 904 IPR017103 -
Phac1g00297 911 PIRSF IGluLR_plant 3 368 IPR017103 -
Phac1g00297 911 SMART GluR_14 467 800 IPR001320 GO:0015276|GO:0016020
Phac1g00297 911 Gene3D - 163 334 - -
Phac1g00297 911 Gene3D - 458 589 - -
Phac1g00297 911 SUPERFAMILY Periplasmic binding protein-like II 445 796 - -
Phac1g00297 911 CDD GluR_Plant 464 798 - -
Phac1g00297 911 FunFam Glutamate receptor 166 335 - -
Phac1g00297 911 Pfam Bacterial extracellular solute-binding proteins, family 3 490 797 IPR001638 -
Phac1g00297 911 Gene3D - 762 796 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00297 Phac-Chr1 1836131 1841766 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00297 47 888 Ion Channels AT2G17260 29.157 1.54e-114 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00297 - - vra:106763764 1568.52