Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00250 ATGTATTCAGACCAAGCGTTTTCTTCAGGGCCCTATGCAGATATATTATCTGGGAATCCTCTTTTACCTCATAACTACAGTGAAACTGTTGGAGAACACAATGAGTTGAAGTTCATCTCATCCATGAGGAACACAATGACTGTGCAACCTATTGATGAGCATTCAAATGCGGCCCCCACAGCTGATCAAAACTCTTTTACCAATGCTGGAGATTCCCATTCCCATCTTGTTCCTAGAACAACACAATTAGGACTTGTGAACAGTGAGCAAAATGTACAGAACCAAGGCTTGTCTCTTAGCCTTGGCTCAGTGATGCCTTCTATTGCATCAGTCCCTACCTTTCCATATCAGTATCCTGGTGCCGGTTTCTCTTCACTAATGAATGCTTCTGTCCAAAATTTAAGGGGCACTTCATCTCTTAAAGATGATGAAGCCAGTCTACAAAGGGAATTGAGAAATGCTGAGTGCATGGCATCTTTAGCTTCTTGTGGCTTTCACAAAAGGGAAGGCGTGTTGTATACTCCACAACACCCCTCAATGTGCCTCAGTGAAGGCCAAAGCGATGGATCACTGGGCTTTTCCAGCAATGTCTTGAACTCACAATACCTCAAGGCAGCACAGGAGCTGCTTGATGAAATAGTTAATGTTCGAAAGGCTTTGAAGCAAACTGGTTTAGAGAAGCAACAGAGTTTCCGTGATATTGGTTTAGATGGCTCTAAAGATTCTGATGGAAAATCTACCAGCCAATCAGGACAGATATCTTCATGTCCCAATAGTTCTGCAGCAAACTCCTCATGTGAGCTCTCACCTGCAGAGCGACAGAATTTGTTGGACAAAAAGACAAAACTTTTGACCATGTTGGATGAGGTTGATAAAAGATACAGACAGTACTGCCACCAGATGCAGATAGTGGTTTCATCTTTTGATATGGTTGCTGGTTGTGGAGCATCTGAACCATACACTGCACTTGCCTTGCGCACAATATCGCGCCACTTTCGGTGTTTGCGCGATGCCATTAGTGGCCAAATTCAAGTGACTCAAAGGAGCCTTGGAGAACAAGAAGGAATACCTCGTCTCCGCTATGTTGATCAGCAGCTTCGGCAGCAAAAGGCCCTTCAGCAACTTGGTGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAATACTTCGAGCATGGCTCTTTGAGCATTTCCTTCATCCTTATCCAAAGGATTCAGAGAAAATTATGCTGGCTAGGCAAACTGGCTTAACAAGAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTGCGGCTTTGGAAGCCAATGGTTGAAGAGATCTATAAAGAAGAATTTGGCGTTTCTGAGATGAGCAGCAATCTATTATCATCAGAGAACACACTGAAAGCTCCAAGAGATGATGTCCAATCTTCTGACAGTAAAAGGGAAGAGTCGCTGGACAACTTAGTAAAAGTTGATGATAGTGTTATTCAGCATCATGGGTTGAAGTTGGATCATGCCTCAGAGTTGGACAGAGGGATCCAAAGTGGTGATCATGGAGAAAATGCCATGGATCCTACAATTGGGAAACTGCAGGGTGACCAAAGGTTCAACATTAACAACAACAATAGTCCTTATTATGGGGAAGGCTGCATAATTGCTCCTACTCCTGCTACATATGATTTATCAGAGTTAGGTAACATTGGTGTGGGTGGACAGGTGTCACTAGCACTGGAATTGAGGAACTATGAAAGTGAAGGATTTGGTGTGTCCAATGATGAGATGCATAGAAGACGCAAGAAAACAATGGCTTCTTCTTCCCCAGAGGCTGATTTGCTAGACTACCATTTCACAGACCAAGGAAAGCAACAAAACAAGTTTGGCAATCCTCACCTATTACACGAGTTTGTTGTGTGA 1917 0.4366 MYSDQAFSSGPYADILSGNPLLPHNYSETVGEHNELKFISSMRNTMTVQPIDEHSNAAPTADQNSFTNAGDSHSHLVPRTTQLGLVNSEQNVQNQGLSLSLGSVMPSIASVPTFPYQYPGAGFSSLMNASVQNLRGTSSLKDDEASLQRELRNAECMASLASCGFHKREGVLYTPQHPSMCLSEGQSDGSLGFSSNVLNSQYLKAAQELLDEIVNVRKALKQTGLEKQQSFRDIGLDGSKDSDGKSTSQSGQISSCPNSSAANSSCELSPAERQNLLDKKTKLLTMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGASEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPETSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEIYKEEFGVSEMSSNLLSSENTLKAPRDDVQSSDSKREESLDNLVKVDDSVIQHHGLKLDHASELDRGIQSGDHGENAMDPTIGKLQGDQRFNINNNNSPYYGEGCIIAPTPATYDLSELGNIGVGGQVSLALELRNYESEGFGVSNDEMHRRRKKTMASSSPEADLLDYHFTDQGKQQNKFGNPHLLHEFVV* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00250 638 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 74 471 - -
Phac1g00250 638 MobiDBLite consensus disorder prediction 465 485 - -
Phac1g00250 638 MobiDBLite consensus disorder prediction 241 267 - -
Phac1g00250 638 ProSiteProfiles 'Homeobox' domain profile. 379 442 IPR001356 GO:0003677
Phac1g00250 638 SMART prehox3 191 341 IPR006563 -
Phac1g00250 638 Coils Coil 203 223 - -
Phac1g00250 638 CDD homeodomain 382 443 IPR001356 GO:0003677
Phac1g00250 638 Pfam Associated with HOX 197 340 IPR006563 -
Phac1g00250 638 SUPERFAMILY Homeodomain-like 383 449 IPR009057 -
Phac1g00250 638 SMART HOX_1 382 446 IPR001356 GO:0003677
Phac1g00250 638 MobiDBLite consensus disorder prediction 55 74 - -
Phac1g00250 638 Pfam Homeobox KN domain 399 438 IPR008422 GO:0003677|GO:0006355
Phac1g00250 638 Gene3D - 379 456 - -
Phac1g00250 638 MobiDBLite consensus disorder prediction 231 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00250 Phac-Chr1 1595090 1600056 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00250 95 453 Homeobox Transcription Factor Family AT1G19700 51.842 2.58e-112 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Phac1g00250 POX 2.5e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00250 - - gmx:100775682 1058.51