Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00212 ATGCCATTCAGGAGCATACTGCGTGAGCTCAAGGAGATTGGAGAGGGTATCAGCAACATGTATAGAAGAGGGGGAGAGGGAAAGCATGTGCATCGCCATGGAAAATCTCACATTGCACCAGAATGTTCCCTACCATCCTCGTCCTCCTTCTCCTCATCATCATCTTCTTCTTCTTCTTCATCACAGAGTCGGTGGGCTAACTTACCACCAGAGTTGCTTTTAGACATAATTCAAAGGTTGGAAGCCAGTGAAACCTCCTGGCCTTCACGTAGAGCACTTGTGGCATGTTCCTCAGTTTGTAGGCTGTGGAGAGAGATAACAAAGGATGTGGTCAAGACACCAGAACAGTGTGGTTTGCTCACTTTTCCCATATCACTGAAGCAGCCTGGCCCAAGAGACTCACCAATCCAGTGTTTTATCAGGAGAGAAAGAGTGTCTTCAACATATTGTTTATACCTCGGCCTAAGCCCTGCACTTTCTGGTGATATGAGCAAACTGTTACTGGCAGCAAAGAAGATTCGAAGGGCAACATGTACAGAATTTTTAATATCATTGGTTGCTGATGATTTCTCTCGTACTAGCAATACTTACATTGGAAAGTTGAGGTCTAATTTTCTTGGCACCAAGTTCACAATCCTGGATGGCGAGTCCCCACATGATTCTTCACTTCCATTGAACTGCAAGTTGCAGCAAAGAGTCCATCTGAAGCAGGTACTTCCAAAGGTTGCTGCTGCTAATTACAAAGTGGCAACAGTATCTTATGAACTCAATGTCCTCCGAACAAGAGGTCCAAGGAGAATGCGGTGCACGATGCACTTGATACCCATATCTTCAATCCAAGAAGGAGGGAGTGCCCCAACTCCTTTGAAGTTTACAAATTATCTTAATGAGCATGTATCTACCACCACCACCTCAGACTCAAAAGGAAGGAAGCCAGAAGTTGTTGAGTTTGACACAACTGACACTGAAAATACTCAAGAATCAAGCCAGAGGGCAAGGGAACCATTGGTTTTGAAAAACAAGGCCCCTAGATGGCATGAACAACTGCAATGCTGGTGTTTGAATTTCAAGGGAAGGGTTACAGTGGCCTCTGTGAAGAACTTCCAGCTCGTGGCAGCTGCTGAACCATGCCAAAATGTTTCAGCTGCTGAACAAGAAAAAGTGATACTACAATTTGGAAAAATTGGGAAGGACATATTCACCATGGATTACCGATACCCCCTCTCAGCTTTTCAAGCCTTTGCAATATGTTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA 1287 0.446 MPFRSILRELKEIGEGISNMYRRGGEGKHVHRHGKSHIAPECSLPSSSSFSSSSSSSSSSSQSRWANLPPELLLDIIQRLEASETSWPSRRALVACSSVCRLWREITKDVVKTPEQCGLLTFPISLKQPGPRDSPIQCFIRRERVSSTYCLYLGLSPALSGDMSKLLLAAKKIRRATCTEFLISLVADDFSRTSNTYIGKLRSNFLGTKFTILDGESPHDSSLPLNCKLQQRVHLKQVLPKVAAANYKVATVSYELNVLRTRGPRRMRCTMHLIPISSIQEGGSAPTPLKFTNYLNEHVSTTTTSDSKGRKPEVVEFDTTDTENTQESSQRAREPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00212 428 MobiDBLite consensus disorder prediction 24 47 - -
Phac1g00212 428 PANTHER TUBBY-RELATED 37 426 - -
Phac1g00212 428 MobiDBLite consensus disorder prediction 319 333 - -
Phac1g00212 428 Gene3D - 58 111 - -
Phac1g00212 428 Gene3D Tubby Protein; Chain A 124 428 IPR025659 -
Phac1g00212 428 MobiDBLite consensus disorder prediction 300 334 - -
Phac1g00212 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Phac1g00212 428 PRINTS Tubby superfamily signature 356 372 IPR000007 -
Phac1g00212 428 PRINTS Tubby superfamily signature 197 221 IPR000007 -
Phac1g00212 428 PRINTS Tubby superfamily signature 246 273 IPR000007 -
Phac1g00212 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Phac1g00212 428 PRINTS Tubby superfamily signature 181 197 IPR000007 -
Phac1g00212 428 PRINTS Tubby superfamily signature 338 355 IPR000007 -
Phac1g00212 428 ProSitePatterns Tub family signature 1. 356 369 IPR018066 -
Phac1g00212 428 Pfam F-box domain 65 112 IPR001810 GO:0005515
Phac1g00212 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Phac1g00212 428 CDD F-box_AtTLP-like 65 109 - -
Phac1g00212 428 SUPERFAMILY F-box domain 56 109 IPR036047 GO:0005515
Phac1g00212 428 Pfam Tub family 126 423 IPR000007 -
Phac1g00212 428 SUPERFAMILY Tubby C-terminal domain-like 114 428 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00212 Phac-Chr1 1411109 1417468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00212 28 428 TUB Transcription Factor Family AT1G47270 60.837 3.33e-169 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Phac1g00212 Tub 2.7e-105 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00212 K19600 - gmx:100796250 772.311