Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00156 ATGGGTTGGCTTAGCAGAATTTTTAAAGGGTCTGAGCAGAAGATTTCGGAGGGGCATTATAGTAAAGAGGATGCTGGTTATTATCTGCCATCGACTTCTGGGGATGTTTGGAACCAGAACGAGAATGAGGATATAGATCGTGCTATTGCACTGTCTCTGGCCGAAGAGAGCGAGAAAACAAACATTGTAAATGACAACAGATCACAGTTAGAAGAAGATGAACAACTTGCCAGAGCTTTAGAGGAAAGTCTAAACGTGGAGTCTCCTCCCAGATATGGAAATGAAAATGCGTATCAACCAATTCAGTATTTCCCCATGGGGTCCAGGATTTGTGCTGGCTGCTATATTGAGATTGGTTACGGGCGATATCTTAATTGCTTGAACGCATTCTGGCATCCTGAATGCTTCCGCTGCCGAGCTTGCAACCTACCAATCTCTGATTATGAGTTCTCCACATCTGGGAATTACCCTTACCATAAATCATGTTATAAGGAAAGCTACCACCCGAAATGTGATGTCTGCAAGCACTTTATTCCAACAAATCCTGCTGGTCTTATTGAATATAGGGCACATCCATTCTGGGTTCAGAAATATTGCCCTTCTCATGAACATGACTGTACTCCACGATGTTGCAGTTGTGAGCGAATGGAGTCGCAAGAGGCAGGATATATTGCTCATAAGGATGGCCGGAAGCTCTGCTTAGAGTGTCTGGATTCTGCTATCATGGATACAAATGAATGCCAACCCCTTCATGCTGATATACAAAGATTTTATGAAAGCCTAAATATGAAACTGGACCAGCAAATTCCACTATTATTGGTTGAAAGACAAGCACTGAATGAAGCAAGAGAGGGAGATAAGAATGGACACTATCACATGCCGGAAACCAGAGGGCTCTGCCTCTCCGAGGAGCTCAGCACTTTCTCGAGAAGACCAAGATTTGGGTCAGGAAATGGAGCAATGGACATGAGAGCACAGCCATACAGGATGACTCCACATTGTGATGTGACAGCTATTCTCATTTTATATGGCCTTCCAAGATTGCTTACTGGGTCGATCCTAGCCCATGAGATGATGCATGCCTGGCTTCGACTTAAAGGTTATAGGACTCTAAGTCAAGATGTTGAAGAAGGTATCTGTCAGGTTTTGGCTCATATGTGGTTGGAGTCTGAACTTACTTCTGCATCAGGCAGCAACTTTGTATCAGCATCATCCTCATCTGCATCACACTCATCTAAAAAAGGTAAAAGACCTCAGTTTGAGAGGAAGCTTGGGGAGTTCTTCAAGCACCAGATTGAATCAGACATTTCCCCTGTTTATGGAGATGGGTTTAGGGCAGGTCAAAAAGCAGTGCGTAAATATGGTCTCCAAAAGACCCTTCACCACATCAGGATGACGGGGACTTTTCCATTTTAA 1416 0.4386 MGWLSRIFKGSEQKISEGHYSKEDAGYYLPSTSGDVWNQNENEDIDRAIALSLAEESEKTNIVNDNRSQLEEDEQLARALEESLNVESPPRYGNENAYQPIQYFPMGSRICAGCYIEIGYGRYLNCLNAFWHPECFRCRACNLPISDYEFSTSGNYPYHKSCYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWVQKYCPSHEHDCTPRCCSCERMESQEAGYIAHKDGRKLCLECLDSAIMDTNECQPLHADIQRFYESLNMKLDQQIPLLLVERQALNEAREGDKNGHYHMPETRGLCLSEELSTFSRRPRFGSGNGAMDMRAQPYRMTPHCDVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYRTLSQDVEEGICQVLAHMWLESELTSASGSNFVSASSSSASHSSKKGKRPQFERKLGEFFKHQIESDISPVYGDGFRAGQKAVRKYGLQKTLHHIRMTGTFPF* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00156 471 FunFam Protein DA1-related 1 105 164 - -
Phac1g00156 471 Pfam LIM domain 111 165 IPR001781 -
Phac1g00156 471 Pfam Protein DA1 261 466 IPR022087 -
Phac1g00156 471 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 137 192 - -
Phac1g00156 471 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 104 136 - -
Phac1g00156 471 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 71 90 IPR003903 -
Phac1g00156 471 SMART lim_4 110 162 IPR001781 -
Phac1g00156 471 ProSitePatterns LIM zinc-binding domain signature. 111 145 IPR001781 -
Phac1g00156 471 PANTHER PROTEIN DA1-RELATED 2 3 470 IPR045218 -
Phac1g00156 471 Gene3D Cysteine Rich Protein 102 168 - -
Phac1g00156 471 CDD LIM_DA1 111 163 - -
Phac1g00156 471 Coils Coil 63 83 - -
Phac1g00156 471 SMART uim 71 90 IPR003903 -
Phac1g00156 471 SMART uim 40 59 IPR003903 -
Phac1g00156 471 ProSiteProfiles LIM domain profile. 109 169 IPR001781 -
Phac1g00156 471 Pfam Ubiquitin interaction motif 41 55 IPR003903 -
Phac1g00156 471 Pfam Ubiquitin interaction motif 71 84 IPR003903 -
Phac1g00156 471 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 40 59 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00156 Phac-Chr1 1117463 1122853 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phac1g00156 DA1-like 1.3e-95 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00156 - - gmx:100783253 870.537