Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phac1g00154 | ATGGGTTGGCTTAGCAGAATTTTTAAAGGGTCTGAGCAGAAGATTTCGGAGGGGCATTATAGTAAAGAGGATGCTGGTTATTATCTGCCATCGACTTCTGGGGTAACAACAAATGATGTTTGGAACCAGAACGAGAATGAGGATATAGATCGTGCTATTGCACTGTCTCTGGCCGAAGAGAGCGAGAAAACAAACATTGTAAATGACAACAGATCACAGTTAGAAGAAGATGAACAACTTGCCAGAGCTTTAGAGGAAAGTCTAAACGTGGAGTCTCCTCCCAGATATGGAAATGAAAATGCGTATCAACCAATTCAGTATTTCCCCATGGGGTCCAGGATTTGTGCTGGCTGCTATATTGAGATTGGTTACGGGCGATATCTTAATTGCTTGAACGCATTCTGGCATCCTGAATGCTTCCGCTGCCGAGCTTGCAACCTACCAATCTCTGATTATGAGTTCTCCACATCTGGGAATTACCCTTACCATAAATCATGTTATAAGGAAAGCTACCACCCGAAATGTGATGTCTGCAAGCACTTTATTCCAACAAATCCTGCTGGTCTTATTGAATATAGGGCACATCCATTCTGGGTTCAGAAATATTGCCCTTCTCATGAACATGACTGTACTCCACGATGTTGCAGTTGTGAGCGAATGGAGTCGCAAGAGGCAGGATATATTGCTCATAAGGATGGCCGGAAGCTCTGCTTAGAGTGTCTGGATTCTGCTATCATGGATACAAATGAATGCCAACCCCTTCATGCTGATATACAAAGATTTTATGAAAGCCTAAATATGAAACTGGACCAGCAAATTCCACTATTATTGGTTGAAAGACAAGCACTGAATGAAGCAAGAGAGGGAGATAAGAATGGACACTATCACATGCCGGAAACCAGAGGGCTCTGCCTCTCCGAGGAGCTCAGCACTTTCTCGAGAAGACCAAGATTTGGGTCAGGAAATGGAGCAATGGACATGAGAGCACAGCCATACAGGATGACTCCACATTGTGATGTGACAGCTATTCTCATTTTATATGGCCTTCCAAGGTAA | 1056 | 0.4356 | MGWLSRIFKGSEQKISEGHYSKEDAGYYLPSTSGVTTNDVWNQNENEDIDRAIALSLAEESEKTNIVNDNRSQLEEDEQLARALEESLNVESPPRYGNENAYQPIQYFPMGSRICAGCYIEIGYGRYLNCLNAFWHPECFRCRACNLPISDYEFSTSGNYPYHKSCYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWVQKYCPSHEHDCTPRCCSCERMESQEAGYIAHKDGRKLCLECLDSAIMDTNECQPLHADIQRFYESLNMKLDQQIPLLLVERQALNEAREGDKNGHYHMPETRGLCLSEELSTFSRRPRFGSGNGAMDMRAQPYRMTPHCDVTAILILYGLPR* | 352 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phac1g00154 | 351 | ProSiteProfiles | LIM domain profile. | 113 | 173 | IPR001781 | - | |
| Phac1g00154 | 351 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 108 | 140 | - | - | |
| Phac1g00154 | 351 | ProSiteProfiles | Ubiquitin-interacting motif (UIM) domain profile. | 44 | 63 | IPR003903 | - | |
| Phac1g00154 | 351 | PANTHER | PROTEIN DA1-RELATED 2 | 3 | 351 | IPR045218 | - | |
| Phac1g00154 | 351 | SMART | lim_4 | 114 | 166 | IPR001781 | - | |
| Phac1g00154 | 351 | Pfam | LIM domain | 115 | 169 | IPR001781 | - | |
| Phac1g00154 | 351 | Pfam | Protein DA1 | 265 | 351 | IPR022087 | - | |
| Phac1g00154 | 351 | ProSitePatterns | LIM zinc-binding domain signature. | 115 | 149 | IPR001781 | - | |
| Phac1g00154 | 351 | Coils | Coil | 67 | 87 | - | - | |
| Phac1g00154 | 351 | Pfam | Ubiquitin interaction motif | 45 | 59 | IPR003903 | - | |
| Phac1g00154 | 351 | Pfam | Ubiquitin interaction motif | 75 | 88 | IPR003903 | - | |
| Phac1g00154 | 351 | CDD | LIM_DA1 | 115 | 167 | - | - | |
| Phac1g00154 | 351 | Gene3D | Cysteine Rich Protein | 107 | 173 | - | - | |
| Phac1g00154 | 351 | ProSiteProfiles | Ubiquitin-interacting motif (UIM) domain profile. | 75 | 94 | IPR003903 | - | |
| Phac1g00154 | 351 | FunFam | Protein DA1-related 1 | 109 | 168 | - | - | |
| Phac1g00154 | 351 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 141 | 196 | - | - | |
| Phac1g00154 | 351 | SMART | uim | 44 | 63 | IPR003903 | - | |
| Phac1g00154 | 351 | SMART | uim | 75 | 94 | IPR003903 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phac1g00154 | Phac-Chr1 | 1117463 | 1122853 | Tandem |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | Others | Phac1g00154 | DA1-like | 1.3e-32 | CL0126 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Phac1g00154 | - | - | gmx:100809736 | 660.218 |