Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00153 ATGGGTTGGCTTAGCAGAATTTTTAAAGGGTCTGAGCAGAAGATTTCGGAGGGGCATTATAGTAAAGAGGATGCTGGTTATTATCTGCCATCGACTTCTGGGGTAACAACAAATGATGTTTGGAACCAGAACGAGAATGAGGATATAGATCGTGCTATTGCACTGTCTCTGGCCGAAGAGAGCGAGAAAACAAACATTGTAAATGACAACAGATCACAGTTAGAAGAAGATGAACAACTTGCCAGAGCTTTAGAGGAAAGTCTAAACGTGGAGTCTCCTCCCAGATATGGAAATGAAAATGCGTATCAACCAATTCAGTATTTCCCCATGGGGTCCAGGATTTGTGCTGGCTGCTATATTGAGATTGGTTACGGGCGATATCTTAATTGCTTGAACGCATTCTGGCATCCTGAATGCTTCCGCTGCCGAGCTTGCAACCTACCAATCTCTGATTATGAGTTCTCCACATCTGGGAATTACCCTTACCATAAATCATGTTATAAGGAAAGCTACCACCCGAAATGTGATGTCTGCAAGCACTTTATTCCAACAAATCCTGCTGGTCTTATTGAATATAGGGCACATCCATTCTGGGTTCAGAAATATTGCCCTTCTCATGAACATGACTGTACTCCACGATGTTGCAGTTGTGAGCGAATGGAGTCGCAAGAGGCAGGATATATTGCTCATAAGGATGGCCGGAAGCTCTGCTTAGAGTGTCTGGATTCTGCTATCATGGATACAAATGAATGCCAACCCCTTCATGCTGATATACAAAGATTTTATGAAAGCCTAAATATGAAACTGGACCAGCAAATTCCACTATTATTGGTTGAAAGACAAGCACTGAATGAAGCAAGAGAGGGAGATAAGAATGGACACTATCACATGCCGGAAACCAGAGGGCTCTGCCTCTCCGAGGAGCTCAGCACTTTCTCGAGAAGACCAAGATTTGGGTCAGGAAATGGAGCAATGGACATGAGAGCACAGCCATACAGGATGACTCCACATTGTGATGTGACAGCTATTCTCATTTTATATGGCCTTCCAAGATTGCTTACTGGGTCGATCCTAGCCCATGAGATGATGCATGCCTGGCTTCGACTTAAAGGTTATAGGACTCTAAGTCAAGATGTTGAAGAAGGTATCTGTCAGGTTTTGGCTCATATGTGGTTGGAGTCTGAACTTACTTCTGCATCAGGCAGCAACTTTGTATCAGCATCATCCTCATCTGCATCACACTCATCTAAAAAAGGTAAAAGACCTCAGTTTGAGAGGAAGCTTGGGGAGTTCTTCAAGCACCAGATTGAATCAGACATTTCCCCTGTTTATGGAGATGGGTTTAGGGCAGGTCAAAAAGCAGTGCGTAAATATGGTCTCCAAAAGACCCTTCACCACATCAGGATGACGGGGACTTTTCCATTTTAA 1428 0.437 MGWLSRIFKGSEQKISEGHYSKEDAGYYLPSTSGVTTNDVWNQNENEDIDRAIALSLAEESEKTNIVNDNRSQLEEDEQLARALEESLNVESPPRYGNENAYQPIQYFPMGSRICAGCYIEIGYGRYLNCLNAFWHPECFRCRACNLPISDYEFSTSGNYPYHKSCYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWVQKYCPSHEHDCTPRCCSCERMESQEAGYIAHKDGRKLCLECLDSAIMDTNECQPLHADIQRFYESLNMKLDQQIPLLLVERQALNEAREGDKNGHYHMPETRGLCLSEELSTFSRRPRFGSGNGAMDMRAQPYRMTPHCDVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYRTLSQDVEEGICQVLAHMWLESELTSASGSNFVSASSSSASHSSKKGKRPQFERKLGEFFKHQIESDISPVYGDGFRAGQKAVRKYGLQKTLHHIRMTGTFPF* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00153 475 Pfam Protein DA1 265 470 IPR022087 -
Phac1g00153 475 PANTHER PROTEIN DA1-RELATED 2 3 474 IPR045218 -
Phac1g00153 475 ProSiteProfiles LIM domain profile. 113 173 IPR001781 -
Phac1g00153 475 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 44 63 IPR003903 -
Phac1g00153 475 SMART lim_4 114 166 IPR001781 -
Phac1g00153 475 Pfam LIM domain 115 169 IPR001781 -
Phac1g00153 475 ProSitePatterns LIM zinc-binding domain signature. 115 149 IPR001781 -
Phac1g00153 475 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 108 140 - -
Phac1g00153 475 Coils Coil 67 87 - -
Phac1g00153 475 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 141 196 - -
Phac1g00153 475 CDD LIM_DA1 115 167 - -
Phac1g00153 475 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 75 94 IPR003903 -
Phac1g00153 475 SMART uim 44 63 IPR003903 -
Phac1g00153 475 SMART uim 75 94 IPR003903 -
Phac1g00153 475 Gene3D Cysteine Rich Protein 106 172 - -
Phac1g00153 475 FunFam Protein DA1-related 1 109 168 - -
Phac1g00153 475 Pfam Ubiquitin interaction motif 75 88 IPR003903 -
Phac1g00153 475 Pfam Ubiquitin interaction motif 45 59 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00153 Phac-Chr1 1117463 1122853 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phac1g00153 DA1-like 1.4e-95 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00153 - - gmx:100783253 877.085