Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00140 ATGGGGGTTCAGAATTGTAATGGTTGCAGATCCTGGGAGGACGACATTTACTGGTCTCATTTTCAATTCCTCCATTTCATGCAGTTTCTCCGAGCGGAATATGATCAACACCTTGCACTTCCGAAGACTTTTTCAGATAACTTAAGAAAGAAGCTGCCTGAAAATGTGACCCTTAAGGGTCCTAGTGGTGTTGCGTGGAAAGTAGCGATGATTACAAGATGTGACACCTTGTACCTTGCACATGGTTGGGGACAGTTTGTGAAAGATCACTGTTTGAAGGAGAATGATTTCCTGGTCTTCAAGTATAATGGTGAATCTCAGTTTGATGTTTTGGTATTTGATGGGGGGAACTTGTGTGAGAAGGCATGTTCTTATTTTGTTCGAAAATGTGGGCACACCGAAGGTGAACACGTGGGTGGAAGTCTGAACAGGAGAAGGAACACAACAGAAGGTTGTGTGGAAGAAGGACACACCCCTTCAAATGCTGGTGTGAAATGTGCTTCACCTGAGAGATCTGTGCATGCTAATGGTTCGAAGGAGCCAATTAATGTGCCTTTTGAAACTCCTACTCGTAGTGAAGAGGTTTTGAATGCAGATGTTGAATCTGGTGGTGCTGAGCAAGTTAGATCTGTTGGAATCCCTCTGTCAGCTGTTCCCACCGAAACTGCTAATGGGAAAAGGATCAGGAAGCTTGTTTCAGCTGTTAAGCATGTTCAGACCAAGCGGAGGGGCAGACCAGCTAAAGTGTCTCATGTTATGGATAGAGCAAAAGTTACGGATAGAGCACTTGATTGGGTGTCTGGACTAGAACCTGGTGAACCTGTTTCTGCAGTTAGAAGTGGGTCATATGAGCTATATATCTCAAATAGAAGGCCTGTGACAGAAGATGAGATTAAAAATGCCTTTGCATTGGCCCAGGCAGAGCGTACTGAAGACAGTTTGGTTATAGTTATGCGACCATCGCACGTGTACAAGAGATTCTTTGTGTCAATGCCTAACAAGTGGATAGGAGACCACATCAGTCCAATGTCTCAAGATGTGATACTGCGCATGGGCAAGGGTGAATGGATTGCTAGATACAGCTACCACAATATTCGTCATACTGGTGGATTCACAGGTGGGTGGAAACACTTTGTGTTGGACAACAACCTTGAAGAGTATGATGTTTGTGTCTTTAAACCAGCTGGTCAAATGAACGAAACCTTGGTCATTGATATGGCCATTTTCAGAGTTGTTCAGGAGACTGTTCCTCTTTCTGTCATGTCCCCATCTGGAAAAAGAGGTAGAAAATCAGCACAGAATGCTAATCTGACTGAAACATAG 1323 0.4399 MGVQNCNGCRSWEDDIYWSHFQFLHFMQFLRAEYDQHLALPKTFSDNLRKKLPENVTLKGPSGVAWKVAMITRCDTLYLAHGWGQFVKDHCLKENDFLVFKYNGESQFDVLVFDGGNLCEKACSYFVRKCGHTEGEHVGGSLNRRRNTTEGCVEEGHTPSNAGVKCASPERSVHANGSKEPINVPFETPTRSEEVLNADVESGGAEQVRSVGIPLSAVPTETANGKRIRKLVSAVKHVQTKRRGRPAKVSHVMDRAKVTDRALDWVSGLEPGEPVSAVRSGSYELYISNRRPVTEDEIKNAFALAQAERTEDSLVIVMRPSHVYKRFFVSMPNKWIGDHISPMSQDVILRMGKGEWIARYSYHNIRHTGGFTGGWKHFVLDNNLEEYDVCVFKPAGQMNETLVIDMAIFRVVQETVPLSVMSPSGKRGRKSAQNANLTET* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00140 440 SUPERFAMILY DNA-binding pseudobarrel domain 314 399 IPR015300 -
Phac1g00140 440 Gene3D - 293 414 IPR015300 -
Phac1g00140 440 SUPERFAMILY DNA-binding pseudobarrel domain 21 114 IPR015300 -
Phac1g00140 440 CDD B3_DNA 313 410 IPR003340 GO:0003677
Phac1g00140 440 SMART B3_2 314 412 IPR003340 GO:0003677
Phac1g00140 440 SMART B3_2 26 116 IPR003340 GO:0003677
Phac1g00140 440 Pfam B3 DNA binding domain 36 112 IPR003340 GO:0003677
Phac1g00140 440 Pfam B3 DNA binding domain 316 404 IPR003340 GO:0003677
Phac1g00140 440 ProSiteProfiles B3 DNA-binding domain profile. 314 412 IPR003340 GO:0003677
Phac1g00140 440 ProSiteProfiles B3 DNA-binding domain profile. 23 116 IPR003340 GO:0003677
Phac1g00140 440 Gene3D - 19 119 IPR015300 -
Phac1g00140 440 MobiDBLite consensus disorder prediction 421 440 - -
Phac1g00140 440 MobiDBLite consensus disorder prediction 163 186 - -
Phac1g00140 440 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 34 414 IPR044837 -
Phac1g00140 440 MobiDBLite consensus disorder prediction 426 440 - -
Phac1g00140 440 CDD B3_DNA 38 114 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00140 Phac-Chr1 986012 989532 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00140 4 410 REM Transcription Factor Family AT4G33280 32.311 3.48e-69 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phac1g00140 B3 7.1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00140 - - pvu:PHAVU_001G018400g 852.818