Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00138 ATGGGGTGTGACTGTGGGGGGAAGTTAAATTTGAGAAAGCCTCATTTTTATGAGGTTTTTTCCTCTGCCTTCAGCTCTCACAGACTGAAAATTCCGGATGGGTTTGTGTGTCGCATGGAGGGAAGGACGTATGGGTCACTTTCATTGATTGGTCCCAGTGGAAATGTATGGACAGTGCAATTACTTAAGCAGGACAATGATCTATTCTTCCATCATGGATGGTCGTCATTTGTGGTGGATCATAGCCTAGAATGTGGTGACCTTTTGGTTTTCAGATACGAAGGTCACTTGCATTTTACCGTTCAAGTATTTGATAAGGATGCATGTGAGAAAGAGGCAGCATTTATTTCTGAATGCAGTCAAAGTTCGAGTGACTTTGAGGAAATTACGGGACAGAAAAGAGGTACGAAGGAGAGTTCTTCTTTGGACATTGCATTTGATGGTGTTTCAAAGAAAATGAGAGGTTGTAAATATGGGAATCAGGAACATGAACCAGGTTTTGTAGGTAAAGAACTATTGCGTTATGAGGTAGTAAGACCGATTAGAATGTTCAGAGAGACTGAAGAAACCTCTAAAGCGTGTTTGGCTAATGATGCCCTTGTGCCTTTTCACACGGACAATAGAAATGAAGAGGCTGCCATCCTGTATAGAAGTGGAAAGGAAGATGGTAGTTATTTTCTTGGTGGAGTTTCATTATCAAATGTATCAGCACAAGATGAGAAAAAAGTTGCTCGGTCATTTACTTCCAATTATCCGTATTTTGTTAGAATCATGAAAAGCTTCAATGTCAGTGGTTCATATACTCTGAATATTCCATATCAGTTTTCAATGGCACACCTTCCTAATTGCAAGATAAAGATTATTCTTCATAATTTGAAAGGAGAACATTGGACTGTTAATTCTGTGCCAACAACTAGAGTGCATACTAGTCACACACTTTGTGGAGGATGGATGGCTTTTGTTCGTGGTAATAGCATTACGGTTGGAGATATCTGTATTTTTGAGCTTGTGCACAAGTGTGAATTACGTGTTCACATTGCTGGGGTTGGAAATGATGGGCTAGACTGCCAGGTTGGAAGAGTGAATGCAGGACATGTGGGACCTCCCAGATATATGCCAACGAATGCTAAAGTAAACTCAAAGTGCATAAGAAAAGTTGATCTATCAAATAAAAAATGGCCCACGATTGGTCAAGAAACTGTTTTATCCATTGACCTTAAGAAATCTGGCAGAGCTTCAAATGCTTCTAAGCACATGGGCCTTTGCCCTCAGTCCAAAGCTGCCCATAAAAAGCTGGCTTCTCCGAGAAGACATCGGGTTGAAGATGAGCTAAGCTCACAGGCTAAAGCTGGTTTGAGAATGTTGTTTGCACTGGATGAACAAAGAGTAGCTCAAGCTTTTAGTTCCCCTTTTCCTAGTTTTGTTAAAATCATGAAAAAGTTCAATGTCAGTGGGTCATACACTTTGAAAATTCCATACCAGTTCTCAGCTGCACATCTCCCAACTTACAAGACTGAAGTTATACTACGTAATTCAAGAGGTGAATGTTGGACTGTGAACTCTGTCCCAGATGCAAAAGGCCGAACAGTTCACACCTTTTGTGGGGGATGGATGGCCTTTGTTCGTGACAATGACATCAATTTTGGAGACACATGCATTTTTGAACTGGTTGCTCAATCTGAGATGCAGGTGTATATATCTGGGGTCGGAAAGGAAGGGCCTGATCATCAAAATGGGCACTTAAAACTTGATAGATTAGCTAACGTTCCATCTACTTGCTAA 1782 0.4085 MGCDCGGKLNLRKPHFYEVFSSAFSSHRLKIPDGFVCRMEGRTYGSLSLIGPSGNVWTVQLLKQDNDLFFHHGWSSFVVDHSLECGDLLVFRYEGHLHFTVQVFDKDACEKEAAFISECSQSSSDFEEITGQKRGTKESSSLDIAFDGVSKKMRGCKYGNQEHEPGFVGKELLRYEVVRPIRMFRETEETSKACLANDALVPFHTDNRNEEAAILYRSGKEDGSYFLGGVSLSNVSAQDEKKVARSFTSNYPYFVRIMKSFNVSGSYTLNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNSITVGDICIFELVHKCELRVHIAGVGNDGLDCQVGRVNAGHVGPPRYMPTNAKVNSKCIRKVDLSNKKWPTIGQETVLSIDLKKSGRASNASKHMGLCPQSKAAHKKLASPRRHRVEDELSSQAKAGLRMLFALDEQRVAQAFSSPFPSFVKIMKKFNVSGSYTLKIPYQFSAAHLPTYKTEVILRNSRGECWTVNSVPDAKGRTVHTFCGGWMAFVRDNDINFGDTCIFELVAQSEMQVYISGVGKEGPDHQNGHLKLDRLANVPSTC* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00138 593 SUPERFAMILY DNA-binding pseudobarrel domain 19 112 IPR015300 -
Phac1g00138 593 CDD B3_DNA 472 566 IPR003340 GO:0003677
Phac1g00138 593 Gene3D - 234 349 IPR015300 -
Phac1g00138 593 Gene3D - 459 569 IPR015300 -
Phac1g00138 593 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Phac1g00138 593 CDD B3_DNA 252 346 IPR003340 GO:0003677
Phac1g00138 593 ProSiteProfiles B3 DNA-binding domain profile. 254 350 IPR003340 GO:0003677
Phac1g00138 593 SMART B3_2 20 107 IPR003340 GO:0003677
Phac1g00138 593 SMART B3_2 474 570 IPR003340 GO:0003677
Phac1g00138 593 SMART B3_2 254 350 IPR003340 GO:0003677
Phac1g00138 593 Gene3D - 8 109 IPR015300 -
Phac1g00138 593 SUPERFAMILY DNA-binding pseudobarrel domain 247 348 IPR015300 -
Phac1g00138 593 Pfam B3 DNA binding domain 474 563 IPR003340 GO:0003677
Phac1g00138 593 Pfam B3 DNA binding domain 254 346 IPR003340 GO:0003677
Phac1g00138 593 Pfam B3 DNA binding domain 20 106 IPR003340 GO:0003677
Phac1g00138 593 SUPERFAMILY DNA-binding pseudobarrel domain 467 568 IPR015300 -
Phac1g00138 593 CDD B3_DNA 14 105 IPR003340 GO:0003677
Phac1g00138 593 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 27 350 IPR044837 -
Phac1g00138 593 ProSiteProfiles B3 DNA-binding domain profile. 474 570 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00138 Phac-Chr1 974321 978426 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00138 11 386 B3 DNA Binding Superfamily AT3G18990 22.549 1.46e-20 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phac1g00138 B3 3e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00138 - - gmx:100814386 1018.45