Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00121 ATGCAACAATCGAACGGCTCCGATTCCTCGTTGCAGTCGCAGTCCGCGGAGCAGAACGTTACGCGGCAGCCGGCAGCGTCTCCGGCGGTGGCGCGGCCGCAGCAGTGGCTTCCGATGCAGTATCCGACGGCCATGGTAATGCCGCACCACATGCTGCCTCCGCAGCACTACGCGCCGCCGTACGTGCCTTTCCACCACCACCAGTACGCGCCGCCGCACGTCCCGCACCAGCACCAGCAGCACCAGAACGGATCCAGCGGCGAGAACAAAACCGTCTGGATCGGCGATTTGCATCACTGGATGGACGAGAATTATCTCCATCGCTGTTTCGCCTCTACCGGCGAGATTTCCTCCATCAAGGTTATTCGCAATAAGCAAACTGGCCTATCAGAGGGTTATGGATTTGTGGAGTTCTATTCACATGCTACAGCTGAGAAAGTTCTGCAAAACTATGCTGGAATTTTGATGCCCAATACAGAGCAAGCATTCCGTCTAAACTGGGCATCATTTAGCACAGGAGACAAGGGTTCAGATAATGTTCCTGACCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACGGATAGTTTGTTGCATGAAACTTTTGCTAGTGTGTTTCCTTCTGTTAAAGCTGCAAAAGTTGTTTTCGATGCCAATACTGGCCGTTCAAAGGGCTATGGTTTCGTCAGGTTTGGCGATGACAATGAGAGATCCCAGGCCATGACTCAGATGAATGGTGTTTACTGTTCCAGCAGGCCTATGCGTATTGGTGCTGCAACTCCAAGGAAATCATCTGGCCATCAACAGGGAGGTCAGTCAAATGGTACATCCAGCCAATCTGAAGCAGATTCTACCAACACAACAAAGCTAAACGGGACAACAATTGGAAAGCAGACAGTCCGACTTTCTTGGGGCCGTAATCCAGCAAATAAGCAGTTTAGAATGGATTTCGGCAACCCCTGGACTGGGGCATATTATGGGGCCCCTATTTATGATGGTTATGGTTACGCATTGCCTCCTCGTCATGATCCCAGCATATATGCTGCTGCTTATGGAGCTTACCCTCTTTATGGTGCCCACCAACAACAAGTAAGCTAA 1101 0.505 MQQSNGSDSSLQSQSAEQNVTRQPAASPAVARPQQWLPMQYPTAMVMPHHMLPPQHYAPPYVPFHHHQYAPPHVPHQHQQHQNGSSGENKTVWIGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGILMPNTEQAFRLNWASFSTGDKGSDNVPDLSIFVGDLAADVTDSLLHETFASVFPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQGGQSNGTSSQSEADSTNTTKLNGTTIGKQTVRLSWGRNPANKQFRMDFGNPWTGAYYGAPIYDGYGYALPPRHDPSIYAAAYGAYPLYGAHQQQVS* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00121 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 170 IPR000504 GO:0003723
Phac1g00121 366 SMART rrm1_1 184 258 IPR000504 GO:0003723
Phac1g00121 366 SMART rrm1_1 91 166 IPR000504 GO:0003723
Phac1g00121 366 SUPERFAMILY RNA-binding domain, RBD 55 169 IPR035979 GO:0003676
Phac1g00121 366 MobiDBLite consensus disorder prediction 63 88 - -
Phac1g00121 366 MobiDBLite consensus disorder prediction 258 304 - -
Phac1g00121 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 262 IPR000504 GO:0003723
Phac1g00121 366 Gene3D - 171 290 IPR012677 -
Phac1g00121 366 FunFam Polyadenylate-binding protein RBP47C isoform A 182 258 - -
Phac1g00121 366 MobiDBLite consensus disorder prediction 1 31 - -
Phac1g00121 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 254 IPR000504 GO:0003723
Phac1g00121 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 159 IPR000504 GO:0003723
Phac1g00121 366 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 80 312 - -
Phac1g00121 366 SUPERFAMILY RNA-binding domain, RBD 165 278 IPR035979 GO:0003676
Phac1g00121 366 FunFam Polyadenylate-binding protein RBP47C isoform A 89 169 - -
Phac1g00121 366 MobiDBLite consensus disorder prediction 1 25 - -
Phac1g00121 366 MobiDBLite consensus disorder prediction 263 304 - -
Phac1g00121 366 CDD RRM2_SECp43_like 182 261 - -
Phac1g00121 366 CDD RRM1_SECp43_like 91 171 - -
Phac1g00121 366 Gene3D - 89 169 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00121 Phac-Chr1 878843 882385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00121 89 272 Eukaryotic Initiation Factors Gene Family AT1G71770 28.723 1.66e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00121 - - gmx:100819523 614.379