Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00088 ATGGAAGGTGTTGATCAGAGTAATATGAAACGAAATGGTTGTGTATTTGGTTCATCATCGGGAGCAAATCTCAGACCCCCAAATCGATTGAATAATGCTGTGGCTATTAGTCAAATGGGTGTTTCTGAGAATCAGAAACCCTATGGTATACCACCCTCATACCCTAACACAAATATTTCACCTTCTTCACCCTATCCTCAGTTTTTTGGCTCTCAATCCCATTCCAATTCGGTTTCTCAGCGTTTGGGTTCTCCCAATTTGAGTTCTGCTTCATCCCATTCGAGGTCTTTGTCTCAGCCTCCTTTTTTCTCTCTTGATTCCTTGCCCCCATTGAGTCCTTCTCCTTACAAAGAGCCCTCCCTTTCTGACCCAATTTCAACAGATGTGTCTGCTGAGGAAAGCTTGGTTAACCCACATGCCCCTTTGCCTAATCGTGGTCCTGCACTTCAGCTTGGCCATTCTCTTCCACCTCGGAAAGGACACAGGCGATCCAGCAGCGATTCCCCTTTGGGAATCTCTGATTTTATTCAGTCTGCCCCTCAGTTGGTTCCCTCCAGGACTTGGAGTGATCGCGATGGTTCTAGGGGAGGGAACTCGGGTTATGAGAAACCGATTCAGCTGGTGTTGAAGGAACCGATTAAGGATATGGACCGTGCTGATGGTTTTGGTGGGGAACCTATGGTTGGGAGGAAAGAGGATGATGCACTGGATGATTTGTTCAGTGCATACATGAATTTGGACAACATTGATGGTCTGAATTTTTCTGGTATGGAAGATAAGGATTTGGATAGCAGAACCAGTGGTTCCAAGACTGTTGAAAGCAGTGACAACGAAGTTGAGAGTCATGCAAATGGGAAAACAACCGGTGCTCAAGGGGCTAGTTCAAGCTGTTCAGAGGAGAGAAGGGAAGGAGTGAAGAGGAGTTCTGATGGAGACATTGCACCTGGTTCCCGACACCGGAGAAGTTTCTCATTGGACAGCTCCATTGGAAATTTCCACATTGGAGATGAATCACCTAAGCTTCCTCCTTTGCAAAACCGAGGTGGTCAACACTCTCCTAGCAATTCGATAGATGGTAAGACATCTGAAACAAGCATCGAGTTTGGAAATGGTGAATTCAGCTCAGAGGAGCTAAAGAAAATAAAGGAAAATGATAAACTTGCTGAAATTGCCATGGCTGATCCTAAACGTGCAAAAAGGATTTTGGCGAATCGGCTATCTGCTGCTCGTTCGAAAGAGCGGAAGATGCGATACATTTCTGAATTGGAGCTGAAAGTCCAAACACTTCAGACAGAGACAACCACATTGTCTACTCAATTTACCAAATTACAGATGGATAATTCAGAGCTTAAAAGTGAGAATAATGAGTACAAATTGAGGATTCAAGCCTTCGAGCAGCAGTCCCAACTGAAAGATGCTCTGAATGAGACATTGGATGCTGAAGTGCGGCGTTTAAGACGCATGGTTGCAGAACTTGGCGGAGAGACCCTCCTCTCGAGTCGCATGGCTCAACAGCTTGCTATTAGCCAACAAATGTTCCCATTACAGCAGCACCAGCAGCACCCTAACCAGCTTAGACATGCTCAACTGCACAATAACCATTCTCAGGAACAGACACAGACTCAGTCACAGCGCCAGAATGGCAAAGCAACAGCCTACTGA 1662 0.4573 MEGVDQSNMKRNGCVFGSSSGANLRPPNRLNNAVAISQMGVSENQKPYGIPPSYPNTNISPSSPYPQFFGSQSHSNSVSQRLGSPNLSSASSHSRSLSQPPFFSLDSLPPLSPSPYKEPSLSDPISTDVSAEESLVNPHAPLPNRGPALQLGHSLPPRKGHRRSSSDSPLGISDFIQSAPQLVPSRTWSDRDGSRGGNSGYEKPIQLVLKEPIKDMDRADGFGGEPMVGRKEDDALDDLFSAYMNLDNIDGLNFSGMEDKDLDSRTSGSKTVESSDNEVESHANGKTTGAQGASSSCSEERREGVKRSSDGDIAPGSRHRRSFSLDSSIGNFHIGDESPKLPPLQNRGGQHSPSNSIDGKTSETSIEFGNGEFSSEELKKIKENDKLAEIAMADPKRAKRILANRLSAARSKERKMRYISELELKVQTLQTETTTLSTQFTKLQMDNSELKSENNEYKLRIQAFEQQSQLKDALNETLDAEVRRLRRMVAELGGETLLSSRMAQQLAISQQMFPLQQHQQHPNQLRHAQLHNNHSQEQTQTQSQRQNGKATAY* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00088 553 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 394 457 IPR004827 GO:0003700|GO:0006355
Phac1g00088 553 FunFam Transcription factor VIP1 isoform A 394 456 - -
Phac1g00088 553 MobiDBLite consensus disorder prediction 11 105 - -
Phac1g00088 553 CDD bZIP_plant_RF2 397 469 IPR044759 GO:0003700|GO:0006355
Phac1g00088 553 SUPERFAMILY Leucine zipper domain 396 451 IPR046347 GO:0003700|GO:0006355
Phac1g00088 553 MobiDBLite consensus disorder prediction 532 553 - -
Phac1g00088 553 Pfam bZIP transcription factor 396 454 IPR004827 GO:0003700|GO:0006355
Phac1g00088 553 Gene3D - 394 456 - -
Phac1g00088 553 MobiDBLite consensus disorder prediction 260 364 - -
Phac1g00088 553 SMART brlzneu 392 456 IPR004827 GO:0003700|GO:0006355
Phac1g00088 553 MobiDBLite consensus disorder prediction 345 364 - -
Phac1g00088 553 MobiDBLite consensus disorder prediction 299 319 - -
Phac1g00088 553 Coils Coil 471 495 - -
Phac1g00088 553 Coils Coil 440 467 - -
Phac1g00088 553 MobiDBLite consensus disorder prediction 281 298 - -
Phac1g00088 553 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 96 547 - -
Phac1g00088 553 MobiDBLite consensus disorder prediction 1 205 - -
Phac1g00088 553 MobiDBLite consensus disorder prediction 166 194 - -
Phac1g00088 553 MobiDBLite consensus disorder prediction 119 133 - -
Phac1g00088 553 Coils Coil 412 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00088 Phac-Chr1 689326 692959 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00088 41 509 bZIP Transcription Factor Family AT4G38900 46.881 5.70e-104 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phac1g00088 bZIP_1 1.9e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00088 - - gmx:100810841 857.44