Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00080 ATGATGGCTTCCGTAGAAGAAAAGGTTAAAACTGGAGGAGCTGGAGCTGGAGCCGGAGGGGGAATGGTTGTTGGGGGTCAAACTTTGGTGGCTGAGATGAAACTGCTGAAAGAAATGCAGGAACATTCTGGGGTCAGAAAGAATTTGAATTCAGAGTTATGGCATGCTTGTGCAGGCCCTCTTGTTTCATTACCTCAGGTTGGAAGTCTTGTGTTTTACTTTCCTCAGGGACACAGTGAACAGGTGGCGGCTTCTACTAGAAGAACAGCAACGTCGCAGATTCCAAACTACCCCAATCTTCCATCTCAGTTGCTGTGTCAAGTCCAAAATGTCACACTTCATGCAGACAAGGAGACAGATGAAATCTATGCTCAAATGAGTCTCCAGCCACTGAATTCTGAAAGAGAAGCCTTTCCCATATCTGATTTTGGGCTAAAGCACAGCAAACACCCCACTGAGTTCTTCTGCAAAACTCTGACTGCCAGTGACACGAGCACACACGGTGGCTTTTCGGTTCCACGCAGGGCAGCAGAGAAGCTATTTCCTCCATTGGATTACACAATTCAACCCCCAACTCAAGAACTTGTTGTTCGAGATTTGCATGATAATACCTGGACATTTAGACATATTTACAGGGGTCAACCAAAGAGACACCTTCTCACAACAGGATGGAGTTTGTTTGTAGGCTCAAAAAGACTCAGAGCTGGTGATTCTGTTCTTTTCATCAGGGATGAAAAATCGCAATTGCGAGTTGGTGTGAGGCGTGTTAATCGTCAACAAACAACACTTCCATCATCAGTGCTTTCTGCTGATAGCATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCAGCTGCCAATCGAAGTCCATTCACTATTTTCTACAATCCAAGGGCTTGTCCTTCAGAATTTGTTATTCCGCTGGCTAAATACAGAAAAGCTGTATTAGGGACTCAGGTCTCAGTTGGCATGAGATTTGGCATGATGTTTGAGACTGAAGAATCGGGTAAGCGCAGATATATGGGTACAATAGTTGGCATCAGTGATGTGGATCCTCTGAGGTGGCCTGGTTCTAAATGGCGAAATATCCAGGTGGAGTGGGATGAGCCAGGGTGTGTTGATAAACAGAATAGAGTTAGTGTTTGGGAGATTGAGACTCCTGAAAGCCTTTTTATCTTTCCTTCTTTGACTTCAAGTATGAAACGGCCATTGCAATCTGGATTTTATGAAAATGAGTGGGGAACTTTGTTAAGAAGACCTTTTATGAGAGCTCCAGAAAATGGAACTATGGAGCTCTCAAACTCAATGCCAAATCTCTACTCAGACCACCTGATGAAAATGCTTTTCAAACCCCAGGTTATTAACAACAATGGAGCATTGTTATCCGCCATGCAACAAGAATCTGCTGCTACAAGAAGTCCCTTTCAAGAGATGAAGACAGCACTTGCAGTAGAGAACATGCCGCTTAGAAATCTACACACTCAATCTATCCCTGACCAGCACAATCCCTTAAACATGCAATCTCTGTTGAGAAATGATCAACCTGAAAAGTTGCATACTCTTGCCAAAATTGAGCTGCCTTCTGGGATGGTTACTGACAAGCCTAAGTTGGAACCTGAGGTATTACCTGATCATATGCTTGACTATCCTTCCATGGAAGGGTGCAACATTGAAAAGGTGGCAACAAATCCTGTTAACCAGCAAGGCCTAGCAAACCAGTTGACGTTCCATAATCAAAACCAGACTCCTCTCACTCAATCTAATCCATGGCCTATGCAACCTCAGCTAGAATCAGCCATGCCCCATCCTCAAATGATTGACATGACTCAAGCTGAAACTGCTATGGTGAATAGCCTGCTTCCTCAGCTAGACATTGATGAATGGATGGCTTATGCTTCCTCCCAACCTATTGCCATGCCAAACAGACCAACTGGACCTTTATCTGAGTTGCAAGAACACACTTCACTTCAACCTCAAGTAGTGAATCACAATCACCCTTTACCTAATCATGAAGTGTGGGATCATTATGTCAAGAGTTTGAAGTTTTTGTCTCAAACAGACCAGCTAACCTCCATCTGTCAGCCAGGGACTTATGGCCTCAATGGCATGCCAAGTCCAAACAGTCTGAGGGACCTTTCAGCTGAGAGCAACAACCAAAGTGAGATTTGTGTCAATGTTGATGTTAGCAACAGTGTAGGCACCACTGTGGTTGATCCTTCTACTTCAAGCACCATTTTGGATGAGTTTTGCGCAATGAAGGAGAGAGAGTTTCAGAATCCAAATGATTGCATGGTGGGCAACTTGAGTTCAAGCCAGGATGTGCAATCTCAAATAACCTCGGCAAGTCTAGCTGAGTCACACGCCTTTTCTCTCAGAGACATCCCTGACAACTCAGGTGGCACTTCTTCAAGCCATGTTGATTTTGATGAAAGCAGCTTTCTACAGAATAACACGTGGCAGCAAGTACCTGCTCCCATCAGAACTTACACAAAGGTGCAAAAGGCCGGTTCTGTTGGAAGATCAATTGATGTGACTACTTTCAAGAACTATGAGGAGTTGATCCGTGCAATTGAATGCATGTTTGGACTTGATGGTCTGCTGAATGACACTAAAGGTTCTGGATGGAAATTGGTGTATGTAGATTATGAGAGTGATGTTCTACTTGTTGGGGATGATCCTTGGGAGGAATTTGTGGGCTGTGTCCGATGCATCAGAATTTTATCACCTTCAGAAGTTCAGCAGATGAGTGAAGAGGGAATGAAGCTTCTGAACAGTGGAGCTTTACAAGGGATGAATGTTTGA 2802 0.4425 MMASVEEKVKTGGAGAGAGGGMVVGGQTLVAEMKLLKEMQEHSGVRKNLNSELWHACAGPLVSLPQVGSLVFYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVQNVTLHADKETDEIYAQMSLQPLNSEREAFPISDFGLKHSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRVNRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKAVLGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQVEWDEPGCVDKQNRVSVWEIETPESLFIFPSLTSSMKRPLQSGFYENEWGTLLRRPFMRAPENGTMELSNSMPNLYSDHLMKMLFKPQVINNNGALLSAMQQESAATRSPFQEMKTALAVENMPLRNLHTQSIPDQHNPLNMQSLLRNDQPEKLHTLAKIELPSGMVTDKPKLEPEVLPDHMLDYPSMEGCNIEKVATNPVNQQGLANQLTFHNQNQTPLTQSNPWPMQPQLESAMPHPQMIDMTQAETAMVNSLLPQLDIDEWMAYASSQPIAMPNRPTGPLSELQEHTSLQPQVVNHNHPLPNHEVWDHYVKSLKFLSQTDQLTSICQPGTYGLNGMPSPNSLRDLSAESNNQSEICVNVDVSNSVGTTVVDPSTSSTILDEFCAMKEREFQNPNDCMVGNLSSSQDVQSQITSASLAESHAFSLRDIPDNSGGTSSSHVDFDESSFLQNNTWQQVPAPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNSGALQGMNV* 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00080 933 Gene3D - 824 916 - -
Phac1g00080 933 ProSiteProfiles B3 DNA-binding domain profile. 155 257 IPR003340 GO:0003677
Phac1g00080 933 FunFam Auxin response factor 153 257 - -
Phac1g00080 933 FunFam Auxin response factor 319 391 - -
Phac1g00080 933 FunFam Auxin response factor 823 916 - -
Phac1g00080 933 Pfam AUX/IAA family 825 914 IPR033389 -
Phac1g00080 933 Pfam B3 DNA binding domain 155 256 IPR003340 GO:0003677
Phac1g00080 933 ProSiteProfiles PB1 domain profile. 827 911 IPR000270 GO:0005515
Phac1g00080 933 Gene3D - 319 391 - -
Phac1g00080 933 SMART B3_2 155 257 IPR003340 GO:0003677
Phac1g00080 933 Gene3D - 152 256 IPR015300 -
Phac1g00080 933 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 46 917 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phac1g00080 933 SUPERFAMILY CAD & PB1 domains 839 906 - -
Phac1g00080 933 CDD B3_DNA 154 255 IPR003340 GO:0003677
Phac1g00080 933 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phac1g00080 933 SUPERFAMILY DNA-binding pseudobarrel domain 143 284 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00080 Phac-Chr1 630836 636432 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00080 28 931 B3 DNA Binding Superfamily AT1G19850 59.076 0.0 995
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phac1g00080 AUX_IAA 6.1e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00080 K14486 - gmx:100790289 1686