Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00060 ATGGCGTTAAGCAAGTTTTTCAACTTGAACACTCTTCAAATTCCCGATTCAGAAACAAGCACCTTTAACGAAGCCATGCTAGAAGAAGTGGCACCAAATATCCAGCACTTGTTTCCCTACTCTGATGAAAGCTTTTTCCTTTCAAATACCCTTTTTGAAAACTACATTGACCCAAATGCTGCTTTTCTCTATCCTTCAGAGATTCAGTCTCCTTTTGATCCTTTCATTTCACTCCCTCGTCACCACATCTTCCCAACTCATGAAGATTACAACCATTTTCCCTGCTCAAAACGCCAAAAGCTCTGCTTGGAGGAACAACAACATGAGCTTACAACACCAACAATAGATGAGTTTGGTAATTGTTACTCTTTTCAATCTGAAGAGACACAACAGCAGCAATTATTTTGCATGGATCCTCAGTGTGAGGAGAATGGTAAGGAAAGAACCATATCTCCACAGAGCGTTGCCGCAAGAGAAAGAAGAAGAAAGATCACGAATAAGACTCAAGAGCTTGGTAAGTTGGTTCCTGGTGGAACAAAAATGAACACAGCTGATATGCTTAATGCAGCTGCAAAGTATGTTAAGTTCCTTCAAGCCCAAGTTGGAATGCTTGAACTCATGAACTCACTCGAGCAAGAAGATGAAGATGAAGCAGCACCTCCTTCTGAAATTCTACATGCTTTGGTTGTTTCTCCCTTTGTTCAAGAGAAGTTGTATGCGGGGGAAAACACTTTTAACGAAGCCATGTCAGAGGAAATGACACCAAAGATTTCCTACTCGGATGAAAGCTTCTTCCTTTCAAATACCCTTTTTGAAAATTACATTGACCCAAATGCTGCTTTTCTCTATCCTTCAGATATTCACTCTCCTTTTGATCCTTTCATTTCACTCCCTCTCCCTCATGAAGATTACAATCATTTCCCCTGCTCAAAACGCCAAAAGCTCTGCTTCGAGGAACAACAAGTACTACTACATTCACATGAGCTTACAACACCAACAATAGATGAGTTTGGTAATTCTTACTCTTTTCAATCTGAAGAGACACAACAGCAACAATTATTTTGCATGGATCCTCAGTGTGAGGAGAATGGTAAGGAAAGAACCATATCTCCACAGAGCGTTGCCGCAAGAGAAAGAAGAAGAAAGATTACGAATAAGACTCAGGAGCTTGGTAAGTTAGTTCCTGGTGGAACAAAAATGAACACAGCTGATATGCTTAATGCAGTTGCAAAGTATGTTAAGTTCCTTCAAGCCCAAGTTGGAATGCTTGAACTCATGAACTCATTCGAGCATGAGGATGAAACAGCACCTCCTTCTGAAATTCTACATGCTTTGGTTGTTTCTCCCTTTGTTCAAGAGAAGTTGTATGCAGGAGAAAAGTGTTTTTTGCCAAAAGAAACTGTCACCACTTTGACAAAACTTGAAGATATTCAATCAAGACCTAACATGCTTGAAGAACTTAAACAGCACATTGGAACAGACCTTAAGAAACCAAAACAAGAATAA 1506 0.3991 MALSKFFNLNTLQIPDSETSTFNEAMLEEVAPNIQHLFPYSDESFFLSNTLFENYIDPNAAFLYPSEIQSPFDPFISLPRHHIFPTHEDYNHFPCSKRQKLCLEEQQHELTTPTIDEFGNCYSFQSEETQQQQLFCMDPQCEENGKERTISPQSVAARERRRKITNKTQELGKLVPGGTKMNTADMLNAAAKYVKFLQAQVGMLELMNSLEQEDEDEAAPPSEILHALVVSPFVQEKLYAGENTFNEAMSEEMTPKISYSDESFFLSNTLFENYIDPNAAFLYPSDIHSPFDPFISLPLPHEDYNHFPCSKRQKLCFEEQQVLLHSHELTTPTIDEFGNSYSFQSEETQQQQLFCMDPQCEENGKERTISPQSVAARERRRKITNKTQELGKLVPGGTKMNTADMLNAVAKYVKFLQAQVGMLELMNSFEHEDETAPPSEILHALVVSPFVQEKLYAGEKCFLPKETVTTLTKLEDIQSRPNMLEELKQHIGTDLKKPKQE* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00060 501 SMART finulus 154 203 IPR011598 GO:0046983
Phac1g00060 501 SMART finulus 373 422 IPR011598 GO:0046983
Phac1g00060 501 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 367 416 IPR011598 GO:0046983
Phac1g00060 501 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 197 IPR011598 GO:0046983
Phac1g00060 501 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 208 IPR036638 GO:0046983
Phac1g00060 501 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 151 247 IPR045843 GO:0003700|GO:0006355
Phac1g00060 501 Pfam Helix-loop-helix DNA-binding domain 377 417 IPR011598 GO:0046983
Phac1g00060 501 Pfam Helix-loop-helix DNA-binding domain 158 198 IPR011598 GO:0046983
Phac1g00060 501 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 365 427 IPR036638 GO:0046983
Phac1g00060 501 Gene3D - 365 435 IPR036638 GO:0046983
Phac1g00060 501 Gene3D - 146 218 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00060 Phac-Chr1 447564 453179 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00060 363 495 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 44.361 1.72e-24 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac1g00060 HLH 4.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00060 - - pvu:PHAVU_001G006100g 465.307