Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00057 ATGGCAGAAGTGGAACTAGTTCCTGAACAAGGCGTGGCATCTAAAACCGACCAACAAACCAAAACCGAGAGTGTGTCGTTTTTTGGCTTGTTTGCTACTGCTGATTCAACTGACTGTGTCTTGATGTTCCTTGGAAGTGTTGGTTCGTGTCTCCACGGTGCTGCTCTTCCTGTTTTCTTCATTTTGTTTGGTCGCATGATTGACTCTTTGGGACATCTTTCCAATAACCCTCACAAATTGTCCTCGCGAGTTTCTGAGCATGCTTTGTATTTGGTCTACCTTGGAGGAGTTGTTCTCGTATCTGCTTGGATGGGGGTAGCATTCTGGATGCAAACAGGGGAGAGGCAAACGGCACGTTTGCGTTTGAAGTATTTGCAGGCAGTGCTAAGGAAGGATATTGATTTCTTTGACAATGAAGCCAGGGATGCTAATATCATTTTCCACATCTCAAGTGATGCAATACTGGTACAAGATGCCATTGGTGACAAGACAGGCCACGCCATTCGTTACCTTTCTCAATTCATTGTTGGATTTGCCATTGGATTTATCTCAGTGTGGCAGCTCACACTACTCACCTTGGCTGTGGTTCCACTCATAGCCCTAGCTGGGGGAGCTTACACAATAATCATGTCTACTTTATCAGAAAAGGGTGAAGCGGCTTATGCTGAGGCTGGGAAGGTTGCAGAAGAGGTGATTTCTCAAGTGCGTACTGTTTACTCATTTGTAGGAGAAGAGAAAGCAATTGGTTCATACTCAAAGTCTCTAGATAATGCTCTGAACTTGGGCAAGAAGGGTGGTCTGGCAAAAGGAGTTGGAGTAGGCTTCACATATGGCTTGTTATTTTGTGCTTGGGCATTGCTTCTATGGTATGCTAGCATACTTGTGAGGCATCACAGGGCAAATGGAGGAAAAGCGTTCACAACAATTATCAATGTCATCTTTAGTGGATTTGCTCTTGGTCAAGCTGCTCCAAATCTTGGTTCCATTGCCAAAGGGCGTGCTGCTGCAGCCAATATCATGAACATGATTGCATCCGCTTCAAGCAATTCTAAAAGGTTGGATCATGGCACTGTTGTGCCACTAGTTGCTGGTGAAATTGAATTTTGTGAGGTCTGTTTTGCTTATTCCTCAAGATCCAATATGATCTTTGAAAAATTGAGCTTCTCAGTGAGTGCTGGCAAGACTATAGCAGTTGTTGGTCCCAGTGGTTCCGGAAAGAGCACCATTGTTTCACTTATTCAACGGTTCTATGACCCCACTTCAGGTAAGATCCTGTTGGATGGACGTGACCTAAAGAATCTTCAATTGAAGTGGTTGAGAGAACAGATGGGATTGGTTAGTCAAGAACCAGCGCTATTTGCAACAACAATAGCTGAAAATATTTTATTTGGAAAAGAAGATGCAGACATGGATAAAGTCATACAAGCTTCCATGGCTGCAAATGCCCATTCTTTCATTCAAGGATTGCCTGATGGTTATCAAACTCAGGTTGGAGAGGGTGGCACTCAACTTTCAGGGGGGCAAAAGCAGAGAATTGCCATTGCAAGAGCTGTGCTGAGAAACCCAAAAGTATTGCTTTTAGACGAGGCCACAAGTGCTCTAGACTCTGAATCAGAACTCATTGTCCAACAGGCATTGGAAAAAATAATGTCAGACAGAACAACAATAGTTGTTGCTCATAGATTATCCACCATACGCGATGTAGACACAATAATTGTGTTGAAGAATGGCCAAGTGGTTGAGAGTGGAACTCATTTGGAATTGATCTCCAACAATGGAGAGTATGTGAATCTGGTGAGTTTGCAGGCATCACAAACCCTCTCAAACTCCAGATCAATATCTCGCTCTGAAAGTTCAAGAAATTCTAGTTTTAGAGAACATTCAGACAACCTTACCTTAGAGGAGCAGCTGATGTTGGACACAAGAGGAGAATTGCAATCAAGTGATCAACACTTGCCATCAAAGAAAACTTCAGCTCCAACAATTTTGGATTTGCTGAAACTAAATACTCCAGAGTGGCCCTATGCAGTTCTTGGGTCGGTAGGTGCAATATTGGCTGGCATGGAAGCACCTCTCTTTGCACTTGGAATCACTCACATTTTGACAGCATTTTATTCTCCTCAGAGTTCTAAAATCAAGCAAGAAGTAGATAGGGTTGCTCTTATATTTCTTGGAGTGGCTGTTATCACTATACCTATTTATCTATTGCTTCACTACTTCTATACATTGATGGGAGAACACCTCACTGCCCGTGTACGTTTATTAATGTTCTCAGCTATTCTGAACAATGAAGTTGCATGGTTTGATAAGGATGAGAACAACACTGGCTCACTGACAGCCATGCTAGCTGCGGATGCAACATTGGTGAGAAGTGCTCTAGCTGACAGACTCTCAACCATTGTGCAAAATGTAGCTCTCACTGTCACAGCTTTTGTTATTGGCTTCACATTGAGTTGGAAACTAACAGCAGTGGTTGTAGCATGCCTTCCCCTTCTCATAGGAGCTTCTATCACTGAGCAACTATTTCTCAAGGGGTTTGGAGGAGATTATAGCCATGCTTACTCTAAAGCAACTTCTTTGGCTCGTGAAGCTATTTCCAACATACGAACTGTTGCTGCGTTTGGCGCAGAAGATAGAATCTCAATGCAGTTTGCATCTGAATTGAACAGACCTAACAAACAAGCTCTTCTAAGGGGCCACATATCAGGTTTTGGCTATGGCATAACCCAGCTATTGGCTTTCTGCTCCTATGCACTTGGCCTTTGGTATGCATCAGTTTTAATCAAGAAGAAAGAGTCAAATTTTGGGGACATCATGAAGTCCTTCATGGTCTTAATCATCACTTCTCTGGCAATAGCAGAAACACTAGCTCTTACCCCAGACATTGTCAAGGGATCACAGGCACTGGGATCAGTTTTTGGCATTCTCCAAAGGAGAACATCCATCACCCCAAATGATCCAAACTCAAAGATTGTAACTGTTCTAAAAGGAGAGATAGAGTTTAGAAATGTTAGCTTCAAGTACCCTATGAGACCTGACATCACCATATTCCAGAACTTGAATCTCAGAGTCTCAGCAGGCAAGAGTCTAGCAGTAGTGGGACAGAGTGGTTCAGGGAAAAGCACAGTGATTTCTTTGGTGATGAGATTTTATGACCCTGATGCTGGATCAGTCCTGATAGATGAATGTGACATCAAAGGCCTAAACTTGAGATCATTGAGGATGAGAATAGGATTGGTTCAGCAAGAACCTGCTTTGTTCTCAACCACAGTTTATGAAAACATTAAGTATGGAAAAGAGGAGGCATCAGAAATAGAGGTGATGAAAGCAGCCAAAGCAGCAAATGCTCATGAATTCATCAGTAGGATGCCTGAAGGGTATGAAACTGAGGTAGGTGAGAGAGGGGTGCAGTTGTCAGGAGGACAAAAACAAAGAGTTGCAATTGCTAGAGCCATTCTGAAAGATCCATGCATTCTTTTGTTGGATGAAGCCACAAGTGCTCTAGACACAGTATCAGAGAGGCTGGTGCAAGAGGCTCTAGATAAACTGATGGAAGGTAGAACAACAATTTTGGTAGCTCACAGGCTATCAACTGTTCGTGATGCAGACAGCATTGTAGTGCTGCAAAATGGCAGGGTTGCTGAAATGGGAAGCCATGAGAGGCTCATGGCCAAACCTGGAAGCATCTACAAGCAATTGGTTAGTCTGCAGCATGAAAAGCCAGAGGAAGAAGACCATTGA 3741 0.4322 MAEVELVPEQGVASKTDQQTKTESVSFFGLFATADSTDCVLMFLGSVGSCLHGAALPVFFILFGRMIDSLGHLSNNPHKLSSRVSEHALYLVYLGGVVLVSAWMGVAFWMQTGERQTARLRLKYLQAVLRKDIDFFDNEARDANIIFHISSDAILVQDAIGDKTGHAIRYLSQFIVGFAIGFISVWQLTLLTLAVVPLIALAGGAYTIIMSTLSEKGEAAYAEAGKVAEEVISQVRTVYSFVGEEKAIGSYSKSLDNALNLGKKGGLAKGVGVGFTYGLLFCAWALLLWYASILVRHHRANGGKAFTTIINVIFSGFALGQAAPNLGSIAKGRAAAANIMNMIASASSNSKRLDHGTVVPLVAGEIEFCEVCFAYSSRSNMIFEKLSFSVSAGKTIAVVGPSGSGKSTIVSLIQRFYDPTSGKILLDGRDLKNLQLKWLREQMGLVSQEPALFATTIAENILFGKEDADMDKVIQASMAANAHSFIQGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKVLLLDEATSALDSESELIVQQALEKIMSDRTTIVVAHRLSTIRDVDTIIVLKNGQVVESGTHLELISNNGEYVNLVSLQASQTLSNSRSISRSESSRNSSFREHSDNLTLEEQLMLDTRGELQSSDQHLPSKKTSAPTILDLLKLNTPEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPQSSKIKQEVDRVALIFLGVAVITIPIYLLLHYFYTLMGEHLTARVRLLMFSAILNNEVAWFDKDENNTGSLTAMLAADATLVRSALADRLSTIVQNVALTVTAFVIGFTLSWKLTAVVVACLPLLIGASITEQLFLKGFGGDYSHAYSKATSLAREAISNIRTVAAFGAEDRISMQFASELNRPNKQALLRGHISGFGYGITQLLAFCSYALGLWYASVLIKKKESNFGDIMKSFMVLIITSLAIAETLALTPDIVKGSQALGSVFGILQRRTSITPNDPNSKIVTVLKGEIEFRNVSFKYPMRPDITIFQNLNLRVSAGKSLAVVGQSGSGKSTVISLVMRFYDPDAGSVLIDECDIKGLNLRSLRMRIGLVQQEPALFSTTVYENIKYGKEEASEIEVMKAAKAANAHEFISRMPEGYETEVGERGVQLSGGQKQRVAIARAILKDPCILLLDEATSALDTVSERLVQEALDKLMEGRTTILVAHRLSTVRDADSIVVLQNGRVAEMGSHERLMAKPGSIYKQLVSLQHEKPEEEDH* 1247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00057 1246 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 677 964 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac1g00057 1246 SUPERFAMILY ABC transporter transmembrane region 665 977 IPR036640 GO:0005524|GO:0016020
Phac1g00057 1246 Pfam ABC transporter 384 532 IPR003439 GO:0005524
Phac1g00057 1246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 602 IPR027417 -
Phac1g00057 1246 CDD ABC_MTABC3_MDL1_MDL2 366 602 - -
Phac1g00057 1246 ProSitePatterns ABC transporters family signature. 504 518 IPR017871 GO:0005524|GO:0016887
Phac1g00057 1246 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 366 601 IPR003439 GO:0005524
Phac1g00057 1246 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 43 331 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac1g00057 1246 CDD ABC_MTABC3_MDL1_MDL2 999 1237 - -
Phac1g00057 1246 Gene3D ABC transporter type 1, transmembrane domain 29 968 IPR036640 GO:0005524|GO:0016020
Phac1g00057 1246 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 999 1235 IPR003439 GO:0005524
Phac1g00057 1246 SUPERFAMILY ABC transporter transmembrane region 39 339 IPR036640 GO:0005524|GO:0016020
Phac1g00057 1246 CDD ABC_6TM_Pgp_ABCB1_D2_like 666 982 - -
Phac1g00057 1246 Gene3D - 991 1246 IPR027417 -
Phac1g00057 1246 FunFam ABC transporter B family member 4 356 610 - -
Phac1g00057 1246 FunFam ABC transporter B family member 4 989 1244 - -
Phac1g00057 1246 Pfam ABC transporter transmembrane region 43 315 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac1g00057 1246 Pfam ABC transporter transmembrane region 681 950 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac1g00057 1246 Pfam ABC transporter 1018 1166 IPR003439 GO:0005524
Phac1g00057 1246 CDD ABC_6TM_Pgp_ABCB1_D1_like 42 339 - -
Phac1g00057 1246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 988 1237 IPR027417 -
Phac1g00057 1246 ProSitePatterns ABC transporters family signature. 1138 1152 IPR017871 GO:0005524|GO:0016887
Phac1g00057 1246 SMART AAA_5 1026 1212 IPR003593 GO:0016887
Phac1g00057 1246 SMART AAA_5 392 578 IPR003593 GO:0016887
Phac1g00057 1246 PANTHER ABC TRANSPORTER B FAMILY 15 729 IPR039421 -
Phac1g00057 1246 Gene3D - 356 608 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00057 Phac-Chr1 427182 434023 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00057 678 1242 Calmodulin-binding Proteins AT2G36910 40.702 1.40e-129 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00057 K05658 - gmx:100788391 2186.38