Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00050 ATGACTCTTGAAGATTTCTTTACGTTGACTGAAATGAAAGATGGCCTCACGGCCCCTTCTCGAGTGCAAGAATTGGTCTCTGTAATGAAGAAGGAGCAAGATCGTGTTGTTAAAAATGCTGGTGATGCGACAAGGCAGTGGGCTGCTGTTGCAAGCACTATTGCTGCTACAGAGAATAAAGATTGTCTTGATCTTTTTGTTCAATCAGATGGACTTTGGTTCATCAACAGATGGTTAAAGGATGCCCAAAATATGGGTGCTGATAATACAAATGATGGCTTCATTGAAGAGTCAATTACTGCAATGTTGCGAGCAGTTGAAAAACTATATTTAGACAGCGAAAAGTCAATTTCATCCGGAATTTCGGTAACTGTTAATAACCTTCTTGGCCATCACAGCTCTAAAGTGCAGGATAGAGCAAGAGCATTATTTGAGCACTGGAAAGGAGGTGGACTTGGAGATGCTGAACCTCATGATAATTCAGATCTTGATAGACTCAACAATGAGAGTGATAAGACTATCAGGGAGGAAGGCCAGCCATCTTGTGTGAATGAAGCTGGCAATGACAATCATCATCCATCTCAGCTTGCTGGAGATGAGAAGTCTCTATCGGGAGGCTCAAATAGTCAGCTACAAGAGAAAGTTTCTAGTATTCAGATACAGAGTATTGACAATGCACTTCAGTCCTCTGTAAGTTTGGATTGTGAAGATATCAAAGAGAAATCAAGCCATGTTGCTTCTGCTCAAGAATCGACCTTACGTGAAGGTGAGACCACATTGGCTGGGACATGTAGCTTACCTATTACTAAACAAGGCAGTTTCAAAGGACAACAAGATGATTTACAGTTAAGTGACTTGTCCCAAAAGGAGAAGCAAGATCAAGATGTTAATGGTCCTCCTGAAGAATTAAAATCATCAGATATCTCTTCTGCATCTGCAAAGCCAGATCCTGAACCTGCTTCCACTGGTGATAGTGAAGCAAAAGCACTGGAATCTGTGAAAGAAGAACCTGCTTTAGAACATAATGTTGAAAGCAATGAAAAAATTGTTTCTCCTAAAACAAGTGTTTCTGGTAGCATGAGAACGCCTGAATCTGATGGAATGAGTGAGATGGATGATTTCAAAGCTACAAGCTCTAGCAATCCACAAATTCCCAAAGCATCAGAAACTGATGATGACAGTTGTTCAAAAATGTTGCCTGATTTATCTGTCACTGGAAGTAACTTGGAAAAGCCTGAGATGTCTTTCATCAAATCAGAATACATCAGAGCAGTAAAGGAAAGCAAGGACCAGGAGTCTGATCAAGATGATGATACATCAAATGGTTCTGATTCTTTTAATCAGGGCAAAGGTCACAGAAGCCCTAACATTAATGACAAGAGTTCTGACATGGAAATTGAATACGGTAATGTTGATGCTTTAGAAGTTGCTCGACTAGTTGCTCAAGAAGTTGAGAGAGAATGTGTCAGCCCTGTAAAGGAAGCGAATGACCATGATTCTAATCGAACGACAAATGGTTCTGATTCTTTTAAATGGCGAAATGGTCCCAAAAGCCCTAATGTTATTGGCAAGAGTTGTGAAATTGAACTTGAGTATGGTATGGTTGATGCTTTAGAAGTTGCCCGACAAGTTGCTCAGGAGGTTGAGAGAGAAGTTTCCAGCTCTTCAGAGAAAATCTCCGAAGGTGGAATTAGGCAGAGAGGCAGCCTTGATTCTGTAGGGAGAAAGGATGAGGTTACTCGAATCCTGCCTGAGGAAGTATCATCCAGGCAAAGCAACTCTGCTGAAGTGTGTTCCGAAGAGGTCAGGCATATGACTGTTTCAGATAATGTTGAGACTGGGCCAGATGACTTGGACTCCTCGCAGGTAACTGAAGCAGCTCAAGACCCAGGAGGTAATTCAGAGAAAAGTCTCTGTACCTTTGATCTCAATGAAGAAGTTGTTTCTGATGATATGGATGTTTCTGTAAATGCTATGTCTACTGTGCCAATACCAGTTGTCTCTGCTTCAAAACCTGCTCAGTCTTCTGGGTTACCAATGGCCCCTTTGCAGTTTGAGGGGACCCTCGGATGGAAAGGATCAGCTGCCACCAGTGCCTTTCGTCGTGCATCACCTCGTAGAAATTCTGATGGCGAGAAGAATGTTTCTGTTGGTAGAAACTCAGAGATTTCCAAGCAGAGGCATTGTTGCCTTGATTTCGATCTGAATGTGGCTGAAGGTGAAGAAGGATTGGTAAAACAAATTGGTGAATCTTCAGGCCTTCCTTCTGGTCAATCATCAGTGGAACTTAGTCCTAAAAGATCAAACCGATTCGAATTGGATTTAAACAGTATTGGTGATGATGGTGATGCCCAACCTTCAGATCAGAGGATGGAGGGCCCACTCTTTTCCGGAAGAAATGGTTATTGGAGCCCATCACCTGCTTCTTCATCGTCATCAATGCAACCTTCAGTACGGAACATTGATTTGAACGACAGACCATACTTTCAAACGGATCTAGTGGAGTCATCTTCGATTATTGAAGCATATAAACGGTCTAAATTGGATGCTTCTGTTATCTCTATTTTGGGTGCCAAGGTGGAAGTTGGTAGAAGAGAATATGTTCCTCAAACTTTGTCGTTGCCAAATGGCAAGGCTATTGAGCCAGCAATGGATCATCCATTGTCAGGAGCAGGTGGCATTTTAGGAATGGGTCCCCCACTATCCTACAATCATTCAAATGCTTTTGGGTATAATGGACTTACATCAGTGCCTGCTTTGTCTTTTTCGTCAGCCATGTATGGACCTTCTGGTGGCCCAATTCCGTACATGGTAGACTCGAGAGGAACTCCAGTTATGCCTCAGGTTGGGGGATCTTCCTCTACCGTCCTCTCATCTTATACTCAGCCTCCATTTATCGTAAGCATGACTAGAACGCAGCTTGGTTTAAATGGGGTTGGATCTTCACATCCCAACTTTGATCTAAACTCTGGCTTCACCATTGATGGCCCCAACAGAGACATGTTGACTGCAAGGCAATTTTTCTTTCCTGCTCAAGGCAGGGCTATTGAGGAGCATGTAAGGACCCTTCCACAATCTTCTAGTTCCGGGGTTAGTGTGAAAAGAAAGGAACCAGACGGTGCCTGGGAAACCTATCCACGTAGCTACAAACATCAGCAACCTCCATGGAAATAG 3174 0.4288 MTLEDFFTLTEMKDGLTAPSRVQELVSVMKKEQDRVVKNAGDATRQWAAVASTIAATENKDCLDLFVQSDGLWFINRWLKDAQNMGADNTNDGFIEESITAMLRAVEKLYLDSEKSISSGISVTVNNLLGHHSSKVQDRARALFEHWKGGGLGDAEPHDNSDLDRLNNESDKTIREEGQPSCVNEAGNDNHHPSQLAGDEKSLSGGSNSQLQEKVSSIQIQSIDNALQSSVSLDCEDIKEKSSHVASAQESTLREGETTLAGTCSLPITKQGSFKGQQDDLQLSDLSQKEKQDQDVNGPPEELKSSDISSASAKPDPEPASTGDSEAKALESVKEEPALEHNVESNEKIVSPKTSVSGSMRTPESDGMSEMDDFKATSSSNPQIPKASETDDDSCSKMLPDLSVTGSNLEKPEMSFIKSEYIRAVKESKDQESDQDDDTSNGSDSFNQGKGHRSPNINDKSSDMEIEYGNVDALEVARLVAQEVERECVSPVKEANDHDSNRTTNGSDSFKWRNGPKSPNVIGKSCEIELEYGMVDALEVARQVAQEVEREVSSSSEKISEGGIRQRGSLDSVGRKDEVTRILPEEVSSRQSNSAEVCSEEVRHMTVSDNVETGPDDLDSSQVTEAAQDPGGNSEKSLCTFDLNEEVVSDDMDVSVNAMSTVPIPVVSASKPAQSSGLPMAPLQFEGTLGWKGSAATSAFRRASPRRNSDGEKNVSVGRNSEISKQRHCCLDFDLNVAEGEEGLVKQIGESSGLPSGQSSVELSPKRSNRFELDLNSIGDDGDAQPSDQRMEGPLFSGRNGYWSPSPASSSSSMQPSVRNIDLNDRPYFQTDLVESSSIIEAYKRSKLDASVISILGAKVEVGRREYVPQTLSLPNGKAIEPAMDHPLSGAGGILGMGPPLSYNHSNAFGYNGLTSVPALSFSSAMYGPSGGPIPYMVDSRGTPVMPQVGGSSSTVLSSYTQPPFIVSMTRTQLGLNGVGSSHPNFDLNSGFTIDGPNRDMLTARQFFFPAQGRAIEEHVRTLPQSSSSGVSVKRKEPDGAWETYPRSYKHQQPPWK* 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00050 1057 ProSiteProfiles TFIIS N-terminal domain profile. 73 154 IPR017923 -
Phac1g00050 1057 MobiDBLite consensus disorder prediction 372 389 - -
Phac1g00050 1057 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 150 IPR035441 -
Phac1g00050 1057 MobiDBLite consensus disorder prediction 613 637 - -
Phac1g00050 1057 MobiDBLite consensus disorder prediction 699 719 - -
Phac1g00050 1057 MobiDBLite consensus disorder prediction 549 576 - -
Phac1g00050 1057 MobiDBLite consensus disorder prediction 776 816 - -
Phac1g00050 1057 MobiDBLite consensus disorder prediction 269 462 - -
Phac1g00050 1057 Pfam TFIIS helical bundle-like domain 102 148 IPR017923 -
Phac1g00050 1057 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 150 IPR035441 -
Phac1g00050 1057 MobiDBLite consensus disorder prediction 328 347 - -
Phac1g00050 1057 MobiDBLite consensus disorder prediction 490 518 - -
Phac1g00050 1057 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 493 1057 - -
Phac1g00050 1057 MobiDBLite consensus disorder prediction 1021 1057 - -
Phac1g00050 1057 MobiDBLite consensus disorder prediction 348 364 - -
Phac1g00050 1057 MobiDBLite consensus disorder prediction 802 816 - -
Phac1g00050 1057 MobiDBLite consensus disorder prediction 269 283 - -
Phac1g00050 1057 MobiDBLite consensus disorder prediction 284 300 - -
Phac1g00050 1057 MobiDBLite consensus disorder prediction 172 213 - -
Phac1g00050 1057 Coils Coil 538 558 - -
Phac1g00050 1057 MobiDBLite consensus disorder prediction 440 455 - -
Phac1g00050 1057 MobiDBLite consensus disorder prediction 607 637 - -
Phac1g00050 1057 MobiDBLite consensus disorder prediction 416 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00050 Phac-Chr1 400722 403895 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Phac1g00050 Med26 5.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00050 - - gmx:102667261 1636.31