Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02840 ATGATTCTGTTCCATGGAATTCACCTTCTGGCCATTTTGCCTTTGGTTTCCAAACAGTTCTATACGACAACAATGAGTTCATTCATGTCTGTTCTTGCAGTTTGGTTTGCCAAGGACCCGAATAAAACCATGGTATGGTATGCAAAACCAAGAAACAAATCTCATCTTTTTCCATATGGGTCAACAATGAATCTCACAGACAAAGGAATTGTGGTGTATGATCCAAAGGGTCATGAAGTGTTGTGGCACCGTCCAGAAAACAACACTGTTTCTTTGGTATCGTGTGCTTCTATGCTAGACGATGGAAGTTTTGTGCTTGTGGATGAGAGTGGGAAGAAGGTTTGGGAGAGCTTTGAGGAGCCCACAGATACTATTTTGCCTGGTCAGAATTTGTCTAGGCCTAAAGCCTTCAGAGCACGCCAATCTGAGACGAGTTTTGATGATGGGAGTTTTCAACTCAGTTGGCAGAATGATGGCAATTTGGTTCTTTACTATTCTCCAAAATCAAGCACAGATGATGATGATGAAAGCTCTCAGTCTGCAATACAAGAGGCTTACTGGTCCACTGGAACTTCCAAAACTGAATCACAGCTTTTCTTCGATGAGTCTGGACACATGTACATAAAGAATGACACGGGCTCAGTGATCAGTGAAATCACATATGGTGATCACACAGTTGCTGCTAATAGTTGCAGTTCGAGGTGGTGGAGTGTGGAGGAAAAGCATCCAGAAGATATTTGCCTTTCCTTCACGAAGCAAATTGGGAATGTTATCTGCGATTTTAATAGCTACTGTGTTACCATCGAGGACAAGACTAATTGTTGTAGACCAGATTTTTCACTGCCTAGTTGCAACAAAGAAGGGTGGGAGCAGAACAAGGATCTTGTAGATTTCAAAGAGTATAGTAATTTGGATTGGCCTCTCTCAGATTATGAAAGGTTGCTTGGAACAGAAATGGATACTTGTAGAAAAAAGTGCCTTGAAGATTGCTTTTGTGTTGTGGCCATATATGGTGAAGAAAGCGGTGAGAGAAGCTGTTGGAAGAAGAAGTATCCTTTGAGCAATGGAAGAATGCACCTTAACATAACTAGAATAGCTCTTGTGAAGGTGCCTAAAACAGCTTTAAACAATGGTGGAAAAGAACAGAATACACTTGTGCTTGTTGTATCAATACTCCTTGGAAGCTCAGTGTTGGTTAATGTTTTTCTACTTGTTGCTTTGTTTGCTGCTTTTTTCATTTTCTACCACAAAAGGCTTTTGAATGGTCCAAACTTGTCAGTTGGAACAGTGAGCCACTTCACATACAAGGAGCTTGAAGAAGCAACCACAGGGTATGTTGTTGTGAAAAGGCTAGACAAGATTGTGCAAGAGGGTGATAAAGAGTTCAAAACAGAAGTGAGTGTGATTGGACAAACCCACCACAGAAACTTGGTTCGTCTGTTTGGTTATTGTGATGAAGGGGAGCATCGTCTACTGGTGTATGAATACATGAGCAATGGTTCATTGGCTGGTTTTCTCTTTGGGATCTCAAGGCCTCATTGGAACCAAAGAGTGCAAATTGCTTTGGGGATTGCAAGAGGGCTCACATATTTGCATGAAGAGTGCAGCACTCAGATAATTCACTGTGACATAAAGCCTCAGAACATACTCCTAGACGACTTGTTCACTCCTAGGATTGCTGATTTTGGGTTGGCAAAGTTGTTGTTGGCTGAGCAAACCAATGCTGCTAGAACTGGTTTGAGAGGGACAATTGGTTACTTTGCACCTGAATGGTTCAGAAAAGCTTCAATCACAACCAAAGTAGATGTTTACAGCTTTGGAGTGGTGCTGTTGGAGATCTTGTGTTGCAAGTCAAGTGTTGCCTTTGCACTTGAAAGTGAAGAAGAGGCACTCATAGATTTTGCTTATAGTTGTTATAGCCATGGAAAAGTGGCTAAATTGGTGGAAAATGATGAGGAGGCAAAGAGTGATGTAAAGAGGGTGGAGAATCATGTGATGGTAGCAATTTGGTGCGTTCAAGAGGATCCTTCACTCAGACCCTCCATGAAAAAGATTACACAAATGCTTGAGGGTGTTACAACAATTTCTGTGCCACCTTGCCCTTCTATCTTCACTTCATCACCCTTCTAA 2130 0.4174 MILFHGIHLLAILPLVSKQFYTTTMSSFMSVLAVWFAKDPNKTMVWYAKPRNKSHLFPYGSTMNLTDKGIVVYDPKGHEVLWHRPENNTVSLVSCASMLDDGSFVLVDESGKKVWESFEEPTDTILPGQNLSRPKAFRARQSETSFDDGSFQLSWQNDGNLVLYYSPKSSTDDDDESSQSAIQEAYWSTGTSKTESQLFFDESGHMYIKNDTGSVISEITYGDHTVAANSCSSRWWSVEEKHPEDICLSFTKQIGNVICDFNSYCVTIEDKTNCCRPDFSLPSCNKEGWEQNKDLVDFKEYSNLDWPLSDYERLLGTEMDTCRKKCLEDCFCVVAIYGEESGERSCWKKKYPLSNGRMHLNITRIALVKVPKTALNNGGKEQNTLVLVVSILLGSSVLVNVFLLVALFAAFFIFYHKRLLNGPNLSVGTVSHFTYKELEEATTGYVVVKRLDKIVQEGDKEFKTEVSVIGQTHHRNLVRLFGYCDEGEHRLLVYEYMSNGSLAGFLFGISRPHWNQRVQIALGIARGLTYLHEECSTQIIHCDIKPQNILLDDLFTPRIADFGLAKLLLAEQTNAARTGLRGTIGYFAPEWFRKASITTKVDVYSFGVVLLEILCCKSSVAFALESEEEALIDFAYSCYSHGKVAKLVENDEEAKSDVKRVENHVMVAIWCVQEDPSLRPSMKKITQMLEGVTTISVPPCPSIFTSSPF* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02840 709 SMART serkin_6 419 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac11g02840 709 Gene3D - 118 226 IPR036426 -
Phac11g02840 709 Pfam Protein tyrosine and serine/threonine kinase 427 689 IPR001245 GO:0004672|GO:0006468
Phac11g02840 709 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 20 701 - -
Phac11g02840 709 SUPERFAMILY alpha-D-mannose-specific plant lectins 31 190 IPR036426 -
Phac11g02840 709 PIRSF SRK 17 446 IPR024171 GO:0004674
Phac11g02840 709 PIRSF SRK 443 708 IPR024171 GO:0004674
Phac11g02840 709 Gene3D Transferase(Phosphotransferase) domain 1 498 696 - -
Phac11g02840 709 Pfam D-mannose binding lectin 43 142 IPR001480 -
Phac11g02840 709 Gene3D Phosphorylase Kinase; domain 1 427 497 - -
Phac11g02840 709 ProSiteProfiles Protein kinase domain profile. 413 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac11g02840 709 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 497 697 - -
Phac11g02840 709 SUPERFAMILY Protein kinase-like (PK-like) 428 690 IPR011009 -
Phac11g02840 709 CDD PAN_AP_plant 290 371 - -
Phac11g02840 709 SMART blect_4 2 121 IPR001480 -
Phac11g02840 709 ProSiteProfiles Bulb-type lectin domain profile. 1 119 IPR001480 -
Phac11g02840 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 539 551 IPR008271 GO:0004672|GO:0006468
Phac11g02840 709 Gene3D - 16 117 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02840 Phac-Chr11 40020765 40024275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02840 363 689 Receptor kinase-like Gene Family AT4G23220 32.877 4.34e-60 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Phac11g02840 PK_Tyr_Ser-Thr 2.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02840 - - vra:106753716 1062.75