Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02828 ATGCTATCCATCCAGGGATTGCAAATGTGGGTTGTTGAAAGTGTCTACTGGTCAATGAACATGAATCCTTATAAGTTTGGATTGTCTGGCCCTGGTAGTACATCTTACTATAGTTCTTATGAGGTAAATGGTCATTTGCCGAGAATGGAGATTGATAGGGCTGAGTGGGAATACCCTTCGACAATTACTTCTGTGGAACCAGCCACAACAGATTCTCCACCTAGAAGAGATGGAGTCACCAGCATGCAGACCATCCCTGAAGAATGCAGTCCAAATCATCTTGAGTCCAATAGTAGTAGCCAGGTCATATGGCAAGACAATATCGATCCTGATAATATGACGTATGAGGAACTACTGGACTTGGGAGAGGCAGTTGGGACTCAGAGCCGAGGTCTTTCACAAGAACTTATTGATATGCTTCCAACCTCGAAGTACAAATTTGGTAGCTTATTCAAAAGAAAAAATTCTGGGAAAAGGTGTGTAATTTGTCAGATGACATACAGAAGAGGAGACCAGCAAATGAAATTGCCATGCAGCCATGTGTATCATAGTGAATGCATCACCAAGTGGCTCAGCATTAACAAGAAATGTCCTGTGTGCAACACTGAGGTTTTTGGCGAGGAATCAACGCATTAG 636 0.4277 MLSIQGLQMWVVESVYWSMNMNPYKFGLSGPGSTSYYSSYEVNGHLPRMEIDRAEWEYPSTITSVEPATTDSPPRRDGVTSMQTIPEECSPNHLESNSSSQVIWQDNIDPDNMTYEELLDLGEAVGTQSRGLSQELIDMLPTSKYKFGSLFKRKNSGKRCVICQMTYRRGDQQMKLPCSHVYHSECITKWLSINKKCPVCNTEVFGEESTH* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02828 211 SMART ring_2 160 200 IPR001841 -
Phac11g02828 211 SUPERFAMILY RING/U-box 159 205 - -
Phac11g02828 211 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 12 207 IPR033276 GO:0004842|GO:0016567|GO:0046621
Phac11g02828 211 ProSiteProfiles Zinc finger RING-type profile. 160 201 IPR001841 -
Phac11g02828 211 FunFam E3 ubiquitin ligase BIG BROTHER 122 205 - -
Phac11g02828 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 205 IPR013083 -
Phac11g02828 211 Pfam Ring finger domain 159 201 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02828 Phac-Chr11 39744241 39749714 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02828 13 211 C3H Transcription Factor Family AT3G63530 59.000 1.31e-84 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02828 K19045 - gmx:100785290 400.979