Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02823 ATGCACACACACTCTATAGTCTTATATATCACCAAATTGTTCCTTAATTTCTCACACATCAAATCATTCACCATGACAGATCCTAAGTCCAATTTGTTCCATGAATGGTTCAACTTCATGCTCCTCCACCCTCACTACCCTTCTTCTTCCTCTTCTCAATCCTACCCTCTTGCCAATTACTCAAACAACAGGTTTGGAATTCAATTACAAGGAGAATCATCTTCATCTTCATATTCATATTCGTATTCATATCCTCCTCCTCCTCCTTCATCTCCTCCTCTCAGAGAGGCCCTTCCTCTCATCAACAAGATAAGCCTCACAGGTGAAAATGATGAAGCCTCACCGAGTGTTGTGGAAGAGAAAGAAGAGGAGAAGAAGCATGAGAGTGGTGAAGATGGTGGTGATCAAGAAACTGTGACTGTTGCCCTACACATAGGGCTTCCAAGAATGGATACTTCTTCTGATCTGGGGTCATCTAGGGTGTCCTCAACTTGTAGGGAAATGGGTGAAAAAGAGGAAGTGAACATAGTTTCTGAACACCCTTTGGAAAGATTGAACAAGGGTCAGTATTGGATTCCCACCCCTTCTCAGATTCTCATTGGTCCTACACAGTTCCCATGTCCTGTGTGCTCAAAAACCTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCTGATTCTCTGAAAGGAACACAACCAACAGCTATGTTAAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTGAAGGATTTCAGAACTCTTCAAACACATTACAAGAGAAAGCACGGCATAAAACCCTACATGTGCAGAAAGTGTGGCAAAGCATTTGCAGTGAAAGGTGATTGGAGAACACATGAGAAGAACTGTGGCAAAATATGGTATTGTTTATGTGGCTCTGATTTCAAACACAAAAGGTCCCTAAAAGACCATGTCAAGGCCTTTGGCTATGGCCATGGTGCTTTTGGCATTGATTGCTTGCAAGAAGAAGATGAAGCAGCTTCTGAAATTGAACATGATGGAGAAAATTCAACATGA 1101 0.426 MHTHSIVLYITKLFLNFSHIKSFTMTDPKSNLFHEWFNFMLLHPHYPSSSSSQSYPLANYSNNRFGIQLQGESSSSSYSYSYSYPPPPPSSPPLREALPLINKISLTGENDEASPSVVEEKEEEKKHESGEDGGDQETVTVALHIGLPRMDTSSDLGSSRVSSTCREMGEKEEVNIVSEHPLERLNKGQYWIPTPSQILIGPTQFPCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHVKAFGYGHGAFGIDCLQEEDEAASEIEHDGENST* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02823 366 SMART c2h2final6 205 227 IPR013087 -
Phac11g02823 366 SMART c2h2final6 289 309 IPR013087 -
Phac11g02823 366 SUPERFAMILY beta-beta-alpha zinc fingers 201 227 IPR036236 -
Phac11g02823 366 ProSitePatterns Zinc finger C2H2 type domain signature. 207 227 IPR013087 -
Phac11g02823 366 PANTHER ZINC FINGER PROTEIN WIP2 65 361 IPR043584 GO:0003700|GO:0010468
Phac11g02823 366 SUPERFAMILY beta-beta-alpha zinc fingers 273 309 IPR036236 -
Phac11g02823 366 MobiDBLite consensus disorder prediction 109 137 - -
Phac11g02823 366 Pfam C2H2-type zinc finger 205 224 - -
Phac11g02823 366 MobiDBLite consensus disorder prediction 114 134 - -
Phac11g02823 366 FunFam Zinc finger protein WIP2 258 340 - -
Phac11g02823 366 FunFam zinc finger protein WIP2-like 204 227 - -
Phac11g02823 366 Gene3D Classic Zinc Finger 267 338 - -
Phac11g02823 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 289 309 IPR013087 -
Phac11g02823 366 Gene3D Classic Zinc Finger 204 227 - -
Phac11g02823 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 205 232 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02823 Phac-Chr11 39708322 39711329 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02823 25 359 C2H2 Transcription Factor Family AT3G57670 54.762 1.19e-125 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac11g02823 zf-C2H2_6 2.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02823 - - gmx:100794446 550.821