Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02782 ATGTCTGAAGGCTATTCCTGTGGCTGCTCCGACTCCGACTCTTCCTGCGGCTGTTGGTCTACCGCCGCCACCGCCGCCGCCGCCACCAGATCTGAGGCTTCAACCGAACTCAGACTCTACAGAGCCTTCATCTTCTGTGTCCCCATCTTCTTCACTCTCATTCTCCTCTTTCTCTTCTACCTCTTCTACCTCCGACCGCGAACCAGGCTCCATTGGATCACCCACTTTGGTCTTCCTAACAACCACGACGACCACCACCACCACAATGCCATCTCCACTGCTGAGTTGGGCTTGAACAAAGAACACAGAGAGATGCTGCCAGTTATTGTCTACAAGGAAAGCTTCTCTGTTAAAGATACCCAATGCTCAGTATGCCTCTTGGACTACCAGTCAGAGGATAGGCTTCAACAGATACCTGCATGTGGCCACACATTTCATATGGGCTGCATTGATCTTTGGCTTGCCACCCACACCACCTGCCCTCTCTGCCGCTTCTCCTTACTAACCATAGCTAAATCTTCGACACAAACATCTGATTTGCAGAACAATGAAGAAACACAAGCCGTGGAAGCATCTGAATCAAGATCTACTATGCATATAGAAACCACTGTCCTCCGAAATGTCTCTGGAGAAGTTGCAATCAGCTCTCCCTGCATTGAAGTTGAAGGGCAAAATCAGCAACACAATCAATAA 693 0.4935 MSEGYSCGCSDSDSSCGCWSTAATAAAATRSEASTELRLYRAFIFCVPIFFTLILLFLFYLFYLRPRTRLHWITHFGLPNNHDDHHHHNAISTAELGLNKEHREMLPVIVYKESFSVKDTQCSVCLLDYQSEDRLQQIPACGHTFHMGCIDLWLATHTTCPLCRFSLLTIAKSSTQTSDLQNNEETQAVEASESRSTMHIETTVLRNVSGEVAISSPCIEVEGQNQQHNQ* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02782 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 169 IPR013083 -
Phac11g02782 230 MobiDBLite consensus disorder prediction 176 196 - -
Phac11g02782 230 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Phac11g02782 230 PANTHER RING-H2 FINGER PROTEIN ATL16 33 202 IPR044600 GO:0016567|GO:0016740
Phac11g02782 230 SMART ring_2 122 163 IPR001841 -
Phac11g02782 230 FunFam RING-H2 finger protein ATL7 88 169 - -
Phac11g02782 230 SUPERFAMILY RING/U-box 106 170 - -
Phac11g02782 230 CDD RING-H2_EL5-like 121 164 - -
Phac11g02782 230 Pfam Ring finger domain 121 164 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02782 Phac-Chr11 39351807 39355733 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02782 27 196 C3H Transcription Factor Family AT4G10150 51.630 3.09e-57 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02782 K19039 - gmx:100794211 324.324