Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02760 ATGGGAAAGAAGAACAAAGTGAAGGAGAATGGAGGCAAAGAGCATTGCTCCTCCACACTTTTTGTCTCCAACTTGCCCTATTCCTTTTCCAATTCTCAGTTGGAGGAGACGTTCAGTGAGATTGGACCTGTGAGGCGTTGCTTCATGGTCACACAGAAGGGGTCAGCACAGCATCGTGGTTTCGGTTATGTCCAATTTGCTGTTGAGGAAGACGCCAACCGTGCTATTGAGCTGAAGAATGGTGTATCTGTTGAAGGCCGTAAAATTGGAGTGAAGAATGCAATGCCTCGTCCTCCCCGTGAGGAACGAAAGTCGAAACCAAATAAAGATGATCTTGTAAAACCAAAAGATGATGATGTGAAAGACAGCATATCATCTGGAACAGAGAAGCATGTTTCAGTCTTGAAGGAAGAAGTACAAGTCACAAGTAAACAGAAAAGCTCTAAGAAGCCCGTGGAAACGAAAAAATCAGCTCTTTGTAATGATGTAGCAGATGATGGTGGTTGCTCAGAAAAACAGAGGGTTGCTAGAACTGTTATTTTTGGTGGCCTTATAGATTCTGATATGGCTGAAGAAGTTCACAGCCAAGCCAGAGAGATTGGCACTGTGTGTTCTGTTAACTACCCTCTTTCAAGGAAAGATCTCGAGCAACATGGTCTCATGCAAGATGGCTGTACCATGGATGCTTCGTCTGTACTTTATACAAGTGTTAAATCAGCCCGAGCTTCTGTTGCAAAGTTGCATAAAAAAGTGATAAGAGGAGAAACAGTTTGGGCCCGCCAACTGGGTGGAGAGGGCTCCAAGACTCAGAAATGGAAGCTTATTATCAGAAACCTTCCTTTCAAGGCGAAAGATACTGAAATAAGAGATATGTTTTCATCTGCTGGATATGTGTGGGACGTATTTATTCCACAAAAGTCAGACACAGGTTTGTCTAAGGGCTTTGCTTTTGTAAAGTTCACCTGCAAACAAGATGCAGAAAATGCCATTCAAAAGCTGAATGGATCAAAGTTTGCTAAACGAGTCATAGCTGTTGATTGGGCTGTTCCAAAGAAGATATTTAGTAGTGAAATGAATGATCCTCGTGCATCAGAGAAAGGACAACAAAACTTGAGTGATGAAGATAGTGATGAGGAAGATGTCGAGCTTGTTGATAAAATATCTGGTCAAGGAGATGATAATGATATGAACAACCCTAGTGCCATGGAGGAAGAGGGAGCTCCTCCAGAAGATAATTTTGACGAGGAAGCAGACCTTGCAAGAAAGGTTCTTAACAACTTGCTTGGATCCTCAAGCAAAGGAACATCTGAAAACAATGATTCTATGTTGTCCAAAGAAAACAAAGAGTCAAGATTGGATGAAGTTTTTAAGGATGCAGATGGAAAAGTATCCGATGATTCTGAAAAGGTTTCAGGTGCTTCTAATCCTGAAATTTCCAGCAAAAACAACTTATCAAATCCTAACGGAACCGAAGAAGATTTGCAGAGAACAGTTTTTATAACTAATCTTCCCTTTGAATGTGATAACGAAGAAGTAAAACAACGATTTTCTGGGTTTGGGGAAGTAGAATACTTTGCTCCTGTTCTCCACCAAGTTACCAAGCGACCAAGAGGAACTGGTTTTCTAAAGTTTAAAACTGTAGAAGCAGCTAATACCGCAATTTCAACTGCTATTGCTGCTTCTGGGACAGGTATTTTACTTCAGGGTAGACCATTGAAAGTTTTAAAGGCTTTGGATAAGAAATCGGCACATGACAAGGAACTAGAGAAAGCAAAAAATGAGGTTCACGACCACCGAAATCTTTATTTGGCAAAGGAGGGACTTATTCTTGAGGGATCTACAGCCGCCGAAGGGGTTTCAGCCAGTGATATGTTAAAACGCCAAGAGTTGGAGAGGAAAAAGAAGACAAAGCTTCAATCTCCGAATTTTCATGTTTCGAGAACTCGACTCGTGGTCTACAACTTACCCAAGTCAATGCATGAGAAAGAACTCAAGAAGCTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAAAACCTGTAATTCGGCAGATAAAGTTTTTGAAAAATGATAAGAACGGAAAGGTAGCTCAAGAACGCTATTCTAGGGGAGTTGCCTTTATTGAATTTTCTGAGCATCAGCATGCTCTTGTGGCTCTGAGAGTTCTCAACAATAATCCTGAAACATTCGGTCCTGAACATCGACCGATCGTGGAGTTCGCGCTTGATAATGTTCAAACACTTAAACTTCGGAAGGCAAAGCTACAACAATTTCAGCAGCAGGCTCCTCAAGATGACAACAATGCCATGGGAAATGACAAACCTGGCAACAAAGAAGTTCACATGCTGGATAGAAAACGAAAGGCTAGGGAGCATGGTGAACCGGCTAAGGAAACAGTACTGAATACAAATGGTGAATCAGAGGCAAATGGAAAATCCCCTCAAGGACAAAAGTTCAAAAGACAGAAAGGCAACAACATGACCAAAAGGGCACTGAAAGAAAACCCAGAAGCCTTGTCCATGAAGCCAAAGAATAACCAAAATGGCCAGAAAAGTGGTGGTGCAGCAGTTGAAGATCAAAACACTGCCACTGCCACTGTCACTAACAGAAGAAAACCAGGAAACAAAGGTGATGATACTGGGTTTAGAAAAAGAAAGATGCAGACTCAAGAACAAGAGGCAGGCCATAAGGTGGTTTCTAAGAAACGGCCTAAGAAGAATAAAGATTCAGTAGGGAAGGATGTAGTAGACAAGCTTGACATGCTTATAGAACAATATAGATCCAAGTTCTCACACAAGGGTTCCCAAGAGAATGCAAAGAAAAAACCTTCAAAACAGCTTAGGAAATGGTTCCAATCATAG 2865 0.4154 MGKKNKVKENGGKEHCSSTLFVSNLPYSFSNSQLEETFSEIGPVRRCFMVTQKGSAQHRGFGYVQFAVEEDANRAIELKNGVSVEGRKIGVKNAMPRPPREERKSKPNKDDLVKPKDDDVKDSISSGTEKHVSVLKEEVQVTSKQKSSKKPVETKKSALCNDVADDGGCSEKQRVARTVIFGGLIDSDMAEEVHSQAREIGTVCSVNYPLSRKDLEQHGLMQDGCTMDASSVLYTSVKSARASVAKLHKKVIRGETVWARQLGGEGSKTQKWKLIIRNLPFKAKDTEIRDMFSSAGYVWDVFIPQKSDTGLSKGFAFVKFTCKQDAENAIQKLNGSKFAKRVIAVDWAVPKKIFSSEMNDPRASEKGQQNLSDEDSDEEDVELVDKISGQGDDNDMNNPSAMEEEGAPPEDNFDEEADLARKVLNNLLGSSSKGTSENNDSMLSKENKESRLDEVFKDADGKVSDDSEKVSGASNPEISSKNNLSNPNGTEEDLQRTVFITNLPFECDNEEVKQRFSGFGEVEYFAPVLHQVTKRPRGTGFLKFKTVEAANTAISTAIAASGTGILLQGRPLKVLKALDKKSAHDKELEKAKNEVHDHRNLYLAKEGLILEGSTAAEGVSASDMLKRQELERKKKTKLQSPNFHVSRTRLVVYNLPKSMHEKELKKLCIDAVISRATKQKPVIRQIKFLKNDKNGKVAQERYSRGVAFIEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRKAKLQQFQQQAPQDDNNAMGNDKPGNKEVHMLDRKRKAREHGEPAKETVLNTNGESEANGKSPQGQKFKRQKGNNMTKRALKENPEALSMKPKNNQNGQKSGGAAVEDQNTATATVTNRRKPGNKGDDTGFRKRKMQTQEQEAGHKVVSKKRPKKNKDSVGKDVVDKLDMLIEQYRSKFSHKGSQENAKKKPSKQLRKWFQS* 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02760 954 SMART rrm1_1 19 92 IPR000504 GO:0003723
Phac11g02760 954 SMART rrm1_1 497 575 IPR000504 GO:0003723
Phac11g02760 954 SMART rrm1_1 273 346 IPR000504 GO:0003723
Phac11g02760 954 SMART rrm1_1 649 740 IPR000504 GO:0003723
Phac11g02760 954 MobiDBLite consensus disorder prediction 841 872 - -
Phac11g02760 954 MobiDBLite consensus disorder prediction 929 945 - -
Phac11g02760 954 MobiDBLite consensus disorder prediction 873 899 - -
Phac11g02760 954 MobiDBLite consensus disorder prediction 442 467 - -
Phac11g02760 954 SUPERFAMILY RNA-binding domain, RBD 268 357 IPR035979 GO:0003676
Phac11g02760 954 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 496 579 IPR000504 GO:0003723
Phac11g02760 954 MobiDBLite consensus disorder prediction 89 132 - -
Phac11g02760 954 CDD RRM1_RBM28_like 19 97 - -
Phac11g02760 954 Gene3D - 429 593 IPR012677 -
Phac11g02760 954 Gene3D - 2 110 IPR012677 -
Phac11g02760 954 MobiDBLite consensus disorder prediction 757 917 - -
Phac11g02760 954 FunFam RNA-binding motif protein 28 647 742 - -
Phac11g02760 954 CDD RRM2_RBM28_like 273 349 - -
Phac11g02760 954 MobiDBLite consensus disorder prediction 94 132 - -
Phac11g02760 954 FunFam - 2 124 - -
Phac11g02760 954 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 263 384 - -
Phac11g02760 954 MobiDBLite consensus disorder prediction 929 954 - -
Phac11g02760 954 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 350 IPR000504 GO:0003723
Phac11g02760 954 CDD RRM3_RBM28_like 496 577 - -
Phac11g02760 954 MobiDBLite consensus disorder prediction 468 492 - -
Phac11g02760 954 Gene3D - 259 382 IPR012677 -
Phac11g02760 954 MobiDBLite consensus disorder prediction 358 413 - -
Phac11g02760 954 SUPERFAMILY RNA-binding domain, RBD 496 726 IPR035979 GO:0003676
Phac11g02760 954 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 648 756 IPR000504 GO:0003723
Phac11g02760 954 Gene3D - 647 742 IPR012677 -
Phac11g02760 954 PANTHER RNA-BINDING MOTIF PROTEIN 14B 15 954 - -
Phac11g02760 954 SUPERFAMILY RNA-binding domain, RBD 18 258 IPR035979 GO:0003676
Phac11g02760 954 MobiDBLite consensus disorder prediction 757 772 - -
Phac11g02760 954 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 498 555 IPR000504 GO:0003723
Phac11g02760 954 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274 343 IPR000504 GO:0003723
Phac11g02760 954 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 89 IPR000504 GO:0003723
Phac11g02760 954 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Phac11g02760 954 MobiDBLite consensus disorder prediction 428 492 - -
Phac11g02760 954 Coils Coil 574 601 - -
Phac11g02760 954 CDD RRM4_RBM28_like 648 745 - -
Phac11g02760 954 MobiDBLite consensus disorder prediction 801 823 - -
Phac11g02760 954 MobiDBLite consensus disorder prediction 778 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02760 Phac-Chr11 38674579 38682997 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02760 22 98 Eukaryotic Initiation Factors Gene Family AT3G11400 36.364 1.05e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02760 K14573 - gmx:100794821 1471.45