Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02759 ATGGGAAAGAAGAACAAAGTGAAGGAGAATGGAGGCAAAGAGCATTGCTCCTCCACACTTTTTGTCTCCAACTTGCCCTATTCCTTTTCCAATTCTCAGTTGGAGGAGACGTTCAGTGAGATTGGACCTGTGAGGCGTTGCTTCATGGTCACACAGAAGGGGTCAGCACAGCATCGTGGTTTCGGTTATGTCCAATTTGCTGTTGAGGAAGACGCCAACCGTGCTATTGAGCTGAAGAATGGTGTATCTGTTGAAGGCCGTAAAATTGGAGTGAAGAATGCAATGCCTCGTCCTCCCCGTGAGGAACGAAAGTCGAAACCAAATAAAGTAGCTAATGTAGTAGCGGGAACACCAGATGATCTTGTAAAACCAAAAGATGATGATGTGAAAGACAGCATATCATCTGGAACAGAGAAGCATGTTTCAGTCTTGAAGGAAGAAGTACAAGTCACAAGTAAACAGAAAAGCTCTAAGAAGCCCGTGGAAACGAAAAAATCAGCTCTTTGTAATGATGTAGCAGATGATGGTGGTTGCTCAGAAAAACAGAGGGTTGCTAGAACTGTTATTTTTGGTGGCCTTATAGATTCTGATATGGCTGAAGAAGTTCACAGCCAAGCCAGAGAGATTGGCACTGTGTGTTCTGTTAACTACCCTCTTTCAAGGAAAGATCTCGAGCAACATGGTCTCATGCAAGATGGCTGTACCATGGATGCTTCGTCTGTACTTTATACAAGTGTTAAATCAGCCCGAGCTTCTGTTGCAAAGTTGCATAAAAAAGTGATAAGAGGAGAAACAGTTTGGGCCCGCCAACTGGGTGGAGAGGGCTCCAAGACTCAGAAATGGAAGCTTATTATCAGAAACCTTCCTTTCAAGGCGAAAGATACTGAAATAAGAGATATGTTTTCATCTGCTGGATATGTGTGGGACGTATTTATTCCACAAAAGTCAGACACAGGTTTGTCTAAGGGCTTTGCTTTTGTAAAGTTCACCTGCAAACAAGATGCAGAAAATGCCATTCAAAAGCTGAATGGATCAAAGTTTGCTAAACGAGTCATAGCTGTTGATTGGGCTGTTCCAAAGAAGATATTTAGTAGTGAAATGAATGATCCTCGTGCATCAGAGAAAGGACAACAAAACTTGAGTGATGAAGATAGTGATGAGGAAGATGTCGAGCTTGTTGATAAAATATCTGGTCAAGGAGATGATAATGATATGAACAACCCTAGTGCCATGGAGGAAGAGGGAGCTCCTCCAGAAGATAATTTTGACGAGGAAGCAGACCTTGCAAGAAAGGTTCTTAACAACTTGCTTGGATCCTCAAGCAAAGGAACATCTGAAAACAATGATTCTATGTTGTCCAAAGAAAACAAAGAGTCAAGATTGGATGAAGTTTTTAAGGATGCAGATGGAAAAGTATCCGATGATTCTGAAAAGGTTTCAGGTGCTTCTAATCCTGAAATTTCCAGCAAAAACAACTTATCAAATCCTAACGGAACCGAAGAAGATTTGCAGAGAACAGTTTTTATAACTAATCTTCCCTTTGAATGTGATAACGAAGAAGTAAAACAACGATTTTCTGGGTTTGGGGAAGTAGAATACTTTGCTCCTGTTCTCCACCAAGTTACCAAGCGACCAAGAGGAACTGGTTTTCTAAAGTTTAAAACTGTAGAAGCAGCTAATACCGCAATTTCAACTGCTATTGCTGCTTCTGGGACAGGTATTTTACTTCAGGGTAGACCATTGAAAGTTTTAAAGGCTTTGGATAAGAAATCGGCACATGACAAGGAACTAGAGAAAGCAAAAAATGAGGTTCACGACCACCGAAATCTTTATTTGGCAAAGGAGGGACTTATTCTTGAGGGATCTACAGCCGCCGAAGGGGTTTCAGCCAGTGATATGTTAAAACGCCAAGAGTTGGAGAGGAAAAAGAAGACAAAGCTTCAATCTCCGAATTTTCATGTTTCGAGAACTCGACTCGTGGTCTACAACTTACCCAAGTCAATGCATGAGAAAGAACTCAAGAAGCTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAAAACCTGTAATTCGGCAGATAAAGTTTTTGAAAAATGATAAGAACGGAAAGGTAGCTCAAGAACGCTATTCTAGGGGAGTTGCCTTTATTGAATTTTCTGAGCATCAGCATGCTCTTGTGGCTCTGAGAGTTCTCAACAATAATCCTGAAACATTCGGTCCTGAACATCGACCGATCGTGGAGTTCGCGCTTGATAATGTTCAAACACTTAAACTTCGGAAGGCAAAGCTACAACAATTTCAGCAGCAGGCTCCTCAAGATGACAACAATGCCATGGGAAATGACAAACCTGGCAACAAAGAAGTTCACATGCTGGATAGAAAACGAAAGGCTAGGGAGCATGGTGAACCGGCTAAGGAAACAGTACTGAATACAAATGGTGAATCAGAGGCAAATGGAAAATCCCCTCAAGGACAAAAGTTCAAAAGACAGAAAGGCAACAACATGACCAAAAGGGCACTGAAAGAAAACCCAGAAGCCTTGTCCATGAAGCCAAAGAATAACCAAAATGGCCAGAAAAGTGGTGGTGCAGCAGTTGAAGATCAAAACACTGCCACTGCCACTGTCACTAACAGAAGAAAACCAGGAAACAAAGGTGATGATACTGGGTTTAGAAAAAGAAAGATGCAGACTCAAGAACAAGAGGCAGGCCATAAGGTGGTTTCTAAGAAACGGCCTAAGAAGAATAAAGATTCAGTAGGGAAGGATGTAGTAGACAAGCTTGACATGCTTATAGAACAATATAGATCCAAGTTCTCACACAAGGGTTCCCAAGAGAATGCAAAGAAAAAACCTTCAAAACAGCTTAGGAAATGGTTCCAATCATAG 2892 0.416 MGKKNKVKENGGKEHCSSTLFVSNLPYSFSNSQLEETFSEIGPVRRCFMVTQKGSAQHRGFGYVQFAVEEDANRAIELKNGVSVEGRKIGVKNAMPRPPREERKSKPNKVANVVAGTPDDLVKPKDDDVKDSISSGTEKHVSVLKEEVQVTSKQKSSKKPVETKKSALCNDVADDGGCSEKQRVARTVIFGGLIDSDMAEEVHSQAREIGTVCSVNYPLSRKDLEQHGLMQDGCTMDASSVLYTSVKSARASVAKLHKKVIRGETVWARQLGGEGSKTQKWKLIIRNLPFKAKDTEIRDMFSSAGYVWDVFIPQKSDTGLSKGFAFVKFTCKQDAENAIQKLNGSKFAKRVIAVDWAVPKKIFSSEMNDPRASEKGQQNLSDEDSDEEDVELVDKISGQGDDNDMNNPSAMEEEGAPPEDNFDEEADLARKVLNNLLGSSSKGTSENNDSMLSKENKESRLDEVFKDADGKVSDDSEKVSGASNPEISSKNNLSNPNGTEEDLQRTVFITNLPFECDNEEVKQRFSGFGEVEYFAPVLHQVTKRPRGTGFLKFKTVEAANTAISTAIAASGTGILLQGRPLKVLKALDKKSAHDKELEKAKNEVHDHRNLYLAKEGLILEGSTAAEGVSASDMLKRQELERKKKTKLQSPNFHVSRTRLVVYNLPKSMHEKELKKLCIDAVISRATKQKPVIRQIKFLKNDKNGKVAQERYSRGVAFIEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRKAKLQQFQQQAPQDDNNAMGNDKPGNKEVHMLDRKRKAREHGEPAKETVLNTNGESEANGKSPQGQKFKRQKGNNMTKRALKENPEALSMKPKNNQNGQKSGGAAVEDQNTATATVTNRRKPGNKGDDTGFRKRKMQTQEQEAGHKVVSKKRPKKNKDSVGKDVVDKLDMLIEQYRSKFSHKGSQENAKKKPSKQLRKWFQS* 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02759 963 MobiDBLite consensus disorder prediction 437 501 - -
Phac11g02759 963 SUPERFAMILY RNA-binding domain, RBD 18 267 IPR035979 GO:0003676
Phac11g02759 963 MobiDBLite consensus disorder prediction 120 140 - -
Phac11g02759 963 Gene3D - 656 751 IPR012677 -
Phac11g02759 963 MobiDBLite consensus disorder prediction 477 501 - -
Phac11g02759 963 MobiDBLite consensus disorder prediction 367 422 - -
Phac11g02759 963 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 359 IPR000504 GO:0003723
Phac11g02759 963 SUPERFAMILY RNA-binding domain, RBD 505 735 IPR035979 GO:0003676
Phac11g02759 963 CDD RRM1_RBM28_like 19 97 - -
Phac11g02759 963 MobiDBLite consensus disorder prediction 451 476 - -
Phac11g02759 963 CDD RRM4_RBM28_like 657 754 - -
Phac11g02759 963 MobiDBLite consensus disorder prediction 766 781 - -
Phac11g02759 963 MobiDBLite consensus disorder prediction 766 963 - -
Phac11g02759 963 FunFam - 2 133 - -
Phac11g02759 963 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 272 393 - -
Phac11g02759 963 PANTHER RNA-BINDING MOTIF PROTEIN 14B 15 963 - -
Phac11g02759 963 Coils Coil 583 610 - -
Phac11g02759 963 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 505 588 IPR000504 GO:0003723
Phac11g02759 963 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 352 IPR000504 GO:0003723
Phac11g02759 963 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 507 564 IPR000504 GO:0003723
Phac11g02759 963 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 89 IPR000504 GO:0003723
Phac11g02759 963 SUPERFAMILY RNA-binding domain, RBD 277 366 IPR035979 GO:0003676
Phac11g02759 963 MobiDBLite consensus disorder prediction 882 908 - -
Phac11g02759 963 MobiDBLite consensus disorder prediction 850 881 - -
Phac11g02759 963 MobiDBLite consensus disorder prediction 117 140 - -
Phac11g02759 963 MobiDBLite consensus disorder prediction 915 954 - -
Phac11g02759 963 MobiDBLite consensus disorder prediction 787 807 - -
Phac11g02759 963 MobiDBLite consensus disorder prediction 810 832 - -
Phac11g02759 963 CDD RRM3_RBM28_like 505 586 - -
Phac11g02759 963 SMART rrm1_1 19 92 IPR000504 GO:0003723
Phac11g02759 963 SMART rrm1_1 658 749 IPR000504 GO:0003723
Phac11g02759 963 SMART rrm1_1 506 584 IPR000504 GO:0003723
Phac11g02759 963 SMART rrm1_1 282 355 IPR000504 GO:0003723
Phac11g02759 963 Gene3D - 268 391 IPR012677 -
Phac11g02759 963 FunFam RNA-binding motif protein 28 656 751 - -
Phac11g02759 963 Gene3D - 438 602 IPR012677 -
Phac11g02759 963 Gene3D - 2 109 IPR012677 -
Phac11g02759 963 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Phac11g02759 963 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 657 765 IPR000504 GO:0003723
Phac11g02759 963 CDD RRM2_RBM28_like 282 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02759 Phac-Chr11 38674579 38682997 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02759 22 98 Eukaryotic Initiation Factors Gene Family AT3G11400 36.364 1.07e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02759 K14573 - gmx:100794821 1481.46